View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6328_low_35 (Length: 240)

Name: NF6328_low_35
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6328_low_35
NF6328_low_35
[»] chr8 (2 HSPs)
chr8 (1-170)||(42755409-42755590)
chr8 (176-222)||(42755945-42755991)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 42755409 - 42755590
Alignment:
Q  1 attttttccttattttgaactaaaaaatggctatgctgcatattttaaataaggacaatt------------ccgcgaatatgtaacaagtagtcatgat 88  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||            | |||||||||||||||| |||||||||    
T  42755409 attttttccttattttgaactaaaaaatggctatggtgcatattttaaataaggacaattagtcatttttgtcggcgaatatgtaacaagcagtcatgat 42755508  T
Q  89 aaataaggttcgtacaaagatttgttggagggcttatgcgattttgcaaacaattagctaggtatctttgaattcaaactcc 170  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42755509 aaataaagttcgtacaaagatttgttggagggcttatgcgattttgcaaacaattagctaggtatctttgaattcaaactcc 42755590  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 176 - 222
Target Start/End: Original strand, 42755945 - 42755991
Alignment:
Q  176 ttaagaaccaatgaacaatgtcattgttcttcaaacaataatctccc 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  42755945 ttaagaaccaatgaacaatgtcattgttcttcaaacaataatctccc 42755991  T

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