View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_4 (Length: 581)
Name: NF6328_low_4
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 19 - 574
Target Start/End: Complemental strand, 5800920 - 5800364
Alignment:
| Q |
19 |
tgaatgtgagagataagagggtgaattggaatggattatctatctacctatcaattaaccattggttgtaaacaaaaacaactgaaagtttttgacgaat |
118 |
Q |
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| T |
5800920 |
tgaatgtgagagataagaaggtgaattggaatggattatctatctacctatcaattaaccattggttgtaaacaaaaacaactgaaagtttttgacgaat |
5800821 |
T |
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| Q |
119 |
tcctttctctatctctttgtttggtgtgtgatgtagtgtatgtgaagtgccacttgtgcaatcatatatgcttaacttcttatcaaattaaaaatatatc |
218 |
Q |
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| T |
5800820 |
tcctttctctatctctttgtttggtgtgtgatgtagtgtatgtgaagtgccacttgtgcaatcacatatgcttaacttcttatcaaattaaaaatatatc |
5800721 |
T |
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| Q |
219 |
catatcatatattcagttgaannnnnnngctatttttgatagacggttattgttgttactatttctggaaaatattataccttatcattatccgtatgaa |
318 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800720 |
catatcatatattcagttgaatttttttgctatttttgatagacggttattgttgttactatttctggaaaatattataccttatcattatccgtatgaa |
5800621 |
T |
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| Q |
319 |
aatcttt-nnnnnnntcattatccatatgaaaaaatgtcattgatttgaattgagttgtgtgtgttattgttgtgttcattgtcgtgtcgggatcgatgg |
417 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5800620 |
aatctttaaaaaaaatcattatccatatgaaaaaatgtcattgatttgaattgagttgtgtgtgttattgttgtgttcattgtcgtgtcgggatcgatgg |
5800521 |
T |
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| Q |
418 |
gattgtgcatctcaggagcttctttagctccttctactgatacaaattattattatgaatctccttcattttcatcctatacacataaacgtgattccgg |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
5800520 |
gattgtgcatctcaggagcttctttagctccttctactgatacaaattattattatgaatctccttcattttcatcctatacacataaacgtgattcggg |
5800421 |
T |
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| Q |
518 |
tgtggaaatggggttgcatagagttcctggaagaatattcttgaatggttcatctca |
574 |
Q |
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| T |
5800420 |
cgtggaaatggggttgcatagagttcctggaagaatattcttgaatggttcatctca |
5800364 |
T |
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