View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_42 (Length: 221)
Name: NF6328_low_42
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_42 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 25340043 - 25340263
Alignment:
| Q |
1 |
agaagcataggggaactggttctgataaacgtataatgagtgtggtagcaaaagttgtgaagaaaatgaaagttccagtgacattcatcaacgtaacaca |
100 |
Q |
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| T |
25340043 |
agaagcattggggaactggttctgataaacgtataatgagtgtggtagcaaaagttgtgaagaaaatgaaagttccagtgacattcatcaacgtaacaca |
25340142 |
T |
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| Q |
101 |
aatatcagagtatagaattgatggtcattcttcagtgtatactgaaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagat |
200 |
Q |
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| T |
25340143 |
aatatcagagtatagaattgatggtcattcttcagtgtatactgaaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagat |
25340242 |
T |
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| Q |
201 |
tgcatacattggtgtttgcct |
221 |
Q |
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| T |
25340243 |
tgtatacattggtgtttgcct |
25340263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5232712 - 5232932
Alignment:
| Q |
1 |
agaagcataggggaactggttctgataaacgtataatgagtgtggtagcaaaagttgtgaagaaaatgaaagttccagtgacattcatcaacgtaacaca |
100 |
Q |
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|||| ||| |||||| |||||| ||||| |||| |||||||| ||||| |||||| | |||||||||||||||||||| ||| ||||||| | ||||| |
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| T |
5232712 |
agaatcattggggaagtggttcaaataaaggtatgatgagtgttgtagccaaagttatcaagaaaatgaaagttccagtaacagtcatcaatattacaca |
5232811 |
T |
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| Q |
101 |
aatatcagagtatagaattgatggtcattcttcagtgtatactgaaaatggaggaaaattgttaagtgaagaagagaggacaaatccacaaaatgcagat |
200 |
Q |
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| T |
5232812 |
aatttctgagtatagaattgatggtcattcctcagtttatactgaaactggtggcaaattgttaaatgaagaggaaaggactaatccattgaatgctgat |
5232911 |
T |
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| Q |
201 |
tgcatacattggtgtttgcct |
221 |
Q |
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| T |
5232912 |
tgtatacattggtgtttgcct |
5232932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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