View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6328_low_46 (Length: 205)

Name: NF6328_low_46
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6328_low_46
NF6328_low_46
[»] chr3 (7 HSPs)
chr3 (16-186)||(24982042-24982212)
chr3 (16-186)||(24497275-24497445)
chr3 (17-186)||(25085035-25085204)
chr3 (16-186)||(24923476-24923646)
chr3 (17-186)||(31825573-31825742)
chr3 (16-186)||(24919902-24920072)
chr3 (17-186)||(21584613-21584782)
[»] chr7 (4 HSPs)
chr7 (17-186)||(10575384-10575553)
chr7 (23-186)||(39954861-39955024)
chr7 (17-162)||(354401-354547)
chr7 (17-126)||(10580784-10580893)
[»] chr2 (1 HSPs)
chr2 (44-186)||(41027596-41027738)
[»] chr8 (1 HSPs)
chr8 (17-186)||(14261048-14261217)
[»] chr4 (3 HSPs)
chr4 (38-186)||(22898571-22898719)
chr4 (38-186)||(22950239-22950387)
chr4 (23-162)||(53328717-53328856)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 24982042 - 24982212
Alignment:
Q  16 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 115  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982042 aagaagaggtggtgttaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 24982141  T
Q  116 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24982142 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 24982212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 24497445 - 24497275
Alignment:
Q  16 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 115  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||    
T  24497445 aagaagaggtggtgttaagagaatcagtggattgatctatgaagaaaccagaggtgtcttgaagatcttcttggaaaatgtgatccgtgatgcagttaca 24497346  T
Q  116 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  24497345 tacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaag 24497275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 25085035 - 25085204
Alignment:
Q  17 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 116  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25085035 agaagaggtggtgtgaagagaatcagtggtttgatatatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtgatccgtgatgcagttacat 25085134  T
Q  117 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    ||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| |||||    
T  25085135 acactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaag 25085204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 24923646 - 24923476
Alignment:
Q  16 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||    
T  24923646 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcattcgtgatgctgtgaca 24923547  T
Q  116 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||||||||||||| ||||||||||| || || |||||||||||||||||||||||||||||||| |||||    
T  24923546 tacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaag 24923476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 31825742 - 31825573
Alignment:
Q  17 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 116  Q
    |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||    
T  31825742 agaagaggtggtgtgaagaggatcagtggtttgatctatgaagaaactagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcggtcacat 31825643  T
Q  117 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||    
T  31825642 acactgagcacgctaggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaag 31825573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 24920072 - 24919902
Alignment:
Q  16 aagaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 115  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| || |||    
T  24920072 aagaagaggtggtgtgaagagaatcagcggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttagagaatgtcattcgtgatgctgtgaca 24919973  T
Q  116 tacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||| || |||||    
T  24919972 tacactgagcacgctaggaggaagacagtgacagccatggatgtcgtctatgctttgaagaggcagggaag 24919902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 21584782 - 21584613
Alignment:
Q  17 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 116  Q
    ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| ||  | ||||| |||||||||||||| || |||||||| ||||| |    
T  21584782 agaagaggtggtgttaagagaatcagtggtttgatttatgaggaaacaagaggagttcttaagattttcttggagaatgtgattcgtgatgcggttacgt 21584683  T
Q  117 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||||||||| || |||||||||||||| || || ||||||||||| |||||||||||||| ||||||||    
T  21584682 acactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaag 21584613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 10575384 - 10575553
Alignment:
Q  17 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 116  Q
    |||||||| ||||| || ||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||||| ||  | ||||| ||||| |    
T  10575384 agaagaggaggtgtgaaaagaatcagtggattgatctatgaggaaacaagaggtgtgttgaagatcttcttggagaatgttataagagatgctgttactt 10575483  T
Q  117 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||||||||| || |||||||| ||||| || || ||||||||||| || ||  | ||||||||||||||    
T  10575484 acactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaag 10575553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 39955024 - 39954861
Alignment:
Q  23 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg 122  Q
    |||||||| ||||||||||| ||| | ||||| ||||| ||  | |||||  | ||||||||  | |||||||| || |||||||| ||||| |||||||    
T  39955024 ggtggtgtgaagagaatcagcggtctcatctacgaagagactcgcggtgttctcaagatctttcttgagaatgtgattcgtgatgctgttacttacactg 39954925  T
Q  123 agcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||| | ||||| || |||||    
T  39954924 agcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaag 39954861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 354401 - 354547
Alignment:
Q  17 agaagaggtggtgttaagagaatcagtggtttga-tctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttaca 115  Q
    |||||||||||||| ||||| ||||||||||| | ||||||| ||||  ||||| || |||||||| |||||| ||||||  ||  ||||||| |||||     
T  354401 agaagaggtggtgtgaagaggatcagtggttttaatctatgaggaaataagaggagtgttgaagattttcttgcagaatgagatttgtgatgctgttact 354500  T
Q  116 tacactgagcacgctaggaggaagactgttaccgccatggatgttgt 162  Q
    ||||||||||| || |||||||||||| | || || |||||||||||    
T  354501 tacactgagcatgcaaggaggaagactctgactgctatggatgttgt 354547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 10580784 - 10580893
Alignment:
Q  17 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 116  Q
    ||||||| |||||| ||||| |||||||||||||||||||| ||||  |||||  | |||||||| |||||| |||||   || | |||||| ||||| |    
T  10580784 agaagagttggtgtgaagaggatcagtggtttgatctatgaggaaataagaggactgttgaagattttcttgcagaataagattcttgatgctgttactt 10580883  T
Q  117 acactgagca 126  Q
    ||||||||||    
T  10580884 acactgagca 10580893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 2e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 41027596 - 41027738
Alignment:
Q  44 ggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggaggaagactg 143  Q
    ||||||||||| ||||| ||  | || || ||||||||||| ||||||||||| || |||||||| ||||| ||||| |||||||||||||| |||||||    
T  41027596 ggtttgatctacgaagagacacgtggcgtgttgaagatctttttggagaatgttattcgtgatgctgttacttacacagagcacgctaggagaaagactg 41027695  T
Q  144 ttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||| || ||||||||||| ||||| |||||||||||||||||    
T  41027696 ttactgctatggatgttgtttatgcattgaagagacaaggaag 41027738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 9e-32; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 14261217 - 14261048
Alignment:
Q  17 agaagaggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacat 116  Q
    |||||||| ||||| ||||||||||| || ||||| |||||||||||  | ||||| |||||||| |||||||||||||| ||  | ||||| ||||| |    
T  14261217 agaagaggaggtgtgaagagaatcagcgggttgatttatgaagaaactcgcggtgtgttgaagattttcttggagaatgtgataagagatgctgttacgt 14261118  T
Q  117 acactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    | ||||| || || ||||||||||| ||||| || ||||||||||| ||||| |||||||||||||||||    
T  14261117 atactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag 14261048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 22898571 - 22898719
Alignment:
Q  38 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 137  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
T  22898571 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22898670  T
Q  138 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||| ||||| || |||||||| || |||||  | |||||||| |||||    
T  22898671 agacggttactgctatggatgtggtttatgccctcaagagacagggaag 22898719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 186
Target Start/End: Original strand, 22950239 - 22950387
Alignment:
Q  38 atcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactgagcacgctaggagga 137  Q
    |||||||||||||| ||||| || ||  | || || |||||||| || ||||||||||| ||  | ||||| || || ||||||||||||||||| ||||    
T  22950239 atcagtggtttgatttatgaggagacacgtggcgtgttgaagatatttttggagaatgtgattagagatgctgtgacttacactgagcacgctagaagga 22950338  T
Q  138 agactgttaccgccatggatgttgtctatgctttgaagagacaaggaag 186  Q
    |||| ||||| || |||||||| || |||||  | |||||||| |||||    
T  22950339 agacggttactgctatggatgtggtttatgccctcaagagacagggaag 22950387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 53328717 - 53328856
Alignment:
Q  23 ggtggtgttaagagaatcagtggtttgatctatgaagaaaccagaggtgtcttgaagatcttcttggagaatgtcatccgtgatgcagttacatacactg 122  Q
    |||||||| ||| | |||||||| || ||||||||||||||  | || ||  | ||||||||  | |||||||| || |||||||| || |||||||| |    
T  53328717 ggtggtgtgaagcgtatcagtggcttaatctatgaagaaactcgtggcgttctcaagatctttcttgagaatgtgattcgtgatgctgtcacatacacag 53328816  T
Q  123 agcacgctaggaggaagactgttaccgccatggatgttgt 162  Q
    |||| ||| |  | ||||||||||| || |||||||||||    
T  53328817 agcatgctcgccgtaagactgttactgcaatggatgttgt 53328856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University