View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_8 (Length: 450)
Name: NF6328_low_8
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 154; Significance: 2e-81; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 37554671 - 37554481
Alignment:
| Q |
19 |
agttcaaatgatggagaaagatcaaagaaaatgatgaatgttgatatatatgaagaggaagaaaatgaagatcataacaaacccataaaatttgagttgc |
118 |
Q |
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| T |
37554671 |
agttcaaatgatggagaaagatcaaagaaaatgatgaatgttgatatatatgaagaggaagaaaatgaagatcataacaaacccataaaatttgagttgc |
37554572 |
T |
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| Q |
119 |
gagggaaacatttatattaatttgtagaattgcgcgcacacatgcacacaaatatatgtgtgtaagtt-gcactcacgagcgcgtaagggagg |
210 |
Q |
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| T |
37554571 |
gagggaaacatttatattaatttgttgaattgcgcgcacacatgcatacaaatatatgtgt--aagtgcgcgctcgcgagcgcgtaagggagg |
37554481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 313 - 445
Target Start/End: Complemental strand, 37554371 - 37554239
Alignment:
| Q |
313 |
aaagggacatgaattcaaatttaatcctcctctgtgtggtgttcccatattatttatcaacttcaacaataaaaataattgttggggccaactttgtcgc |
412 |
Q |
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| T |
37554371 |
aaagggacatgaattaaaatttaatcctcctctgtgtggtgttcgtatattatttatcaacttcaacaataaaaataattgttggggccaactttgtcgc |
37554272 |
T |
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| Q |
413 |
taataaaaatagagctcgaacgttcttctcact |
445 |
Q |
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| T |
37554271 |
taataaaaacagagctcgaacgttcttttcact |
37554239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 96 - 185
Target Start/End: Original strand, 37556356 - 37556444
Alignment:
| Q |
96 |
caaacccataaaatttgagttgcgagggaaacatttatattaatttgtagaattgcgcgcacacatgcacacaaatatatgtgtgtaagt |
185 |
Q |
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| T |
37556356 |
caaacccataaaatttgagttgtgagggaaacatttatattaatttgtagcattgcgcgcacacatacatacaaa-atatgcgtgtaagt |
37556444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 39215043 - 39215093
Alignment:
| Q |
44 |
agaaaatgatgaatgttgatatatatgaagaggaagaaaatgaagatcata |
94 |
Q |
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| T |
39215043 |
agaaaatgatgaatgtcgatgtatatgaagaggaagacgatgaagatcata |
39215093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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