View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6328_low_9 (Length: 431)
Name: NF6328_low_9
Description: NF6328
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6328_low_9 |
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| [»] chr4 (7 HSPs) |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 431
Target Start/End: Complemental strand, 38226875 - 38226461
Alignment:
| Q |
17 |
agaaacattattttttagaaatagattccgtgtagttgggctaccctagattcacgcagacaaatcatcggttgatgatggatcaagatcaaaaagttca |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226875 |
agaaacattagtttttagaaatagattccgtgtagttgggctaccctagattcacgcagacaaatcatcggttgatgatggatcaagatcaaaaagttca |
38226776 |
T |
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| Q |
117 |
cataatatttagcttttgattattttaaaatcaatgacactgggtttggaatccctagacccttcaatcttgatccaacagtcattaatgtgcttattgc |
216 |
Q |
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| T |
38226775 |
cagaatatttagcttttgattattttaaaatcaatgacactgggtttggaatccctagacccttcaatcttgatccaacagtcattaatgtgcttattgc |
38226676 |
T |
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| Q |
217 |
gtgtatgtaaagtctgtcgactgcagagaatccttacttgtagtttttgtcaactcaatttaactctaaaacataaaactagtccattactttgttgggt |
316 |
Q |
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| T |
38226675 |
gtgtatgtaaagtctgtagactgcagagaatccttacttgtagtttttgtcaactcaatttaactctaaaacataaaactagtccattactttgttgggt |
38226576 |
T |
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| Q |
317 |
atatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaaga |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226575 |
atatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaaga |
38226476 |
T |
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| Q |
417 |
ggacaagtctcccac |
431 |
Q |
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| T |
38226475 |
ggacaagtctcccac |
38226461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 270 - 431
Target Start/End: Complemental strand, 38214242 - 38214082
Alignment:
| Q |
270 |
ctcaatttaactctaaaacataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatc |
369 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||| |||||||||||||||||| |
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| T |
38214242 |
ctcaatttaactctaaaacacaaaactagtccattactttgttgggtgtttagtgagcaacatggattt-tttgtttcaggttgagtatcaagttgaatc |
38214144 |
T |
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| Q |
370 |
ttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccac |
431 |
Q |
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| T |
38214143 |
ttgtaccacagatcataatttgagaaatggttgtgttcatgtgatgaggacaagtctcccac |
38214082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 311 - 430
Target Start/End: Complemental strand, 38238120 - 38238001
Alignment:
| Q |
311 |
ttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatg |
410 |
Q |
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||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||| ||||||||||||| || ||||| |||||| ||| |
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| T |
38238120 |
ttgggtatatagtgagcaacatggttttctttgtttcagaatgagtatcaagttgaatcttgcagcacagaccataaggagggaaattcctgtgttcatg |
38238021 |
T |
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| Q |
411 |
tgaagaggacaagtctccca |
430 |
Q |
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| T |
38238020 |
tgaagaggacaagtctccca |
38238001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 308 - 430
Target Start/End: Complemental strand, 38243099 - 38242976
Alignment:
| Q |
308 |
ttgttgggtat-atagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgtt |
406 |
Q |
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||||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| |||||||||||| || |||||| |||||| |
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| T |
38243099 |
ttgttgggtatcatagtgagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcacagaccatagggaggaaaatgggtgtgtt |
38243000 |
T |
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| Q |
407 |
gatgtgaagaggacaagtctccca |
430 |
Q |
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| T |
38242999 |
catgtgaagaggacaagtctccca |
38242976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 325 - 430
Target Start/End: Complemental strand, 38220226 - 38220121
Alignment:
| Q |
325 |
agcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttgatgtgaagaggacaagt |
424 |
Q |
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||||| ||| |||| |||||||||| |||||||||||||||||| ||| |||| ||||||| || |||||||||||||| |||||||||||| |||| |
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| T |
38220226 |
agcaatatggatttctttgtttcaggttgagtatcaagttgaatcatgcaccacaaaccataaggatggaaatggttgtgttcatgtgaagaggataagt |
38220127 |
T |
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| Q |
425 |
ctccca |
430 |
Q |
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| T |
38220126 |
ctccca |
38220121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 431
Target Start/End: Complemental strand, 38248316 - 38248175
Alignment:
| Q |
289 |
ataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaa |
388 |
Q |
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|||| ||||||||| || |||||| ||||||| | ||||||| | |||| |||||||||| ||||||||| |||||||||||| ||||||| || | |
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| T |
38248316 |
ataacactagtccagtagtttgttaggtatattgcgagcaacgtagatttctttgtttcaggttgagtatca-gttgaatcttgcagcacagatcaatag |
38248218 |
T |
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| Q |
389 |
gaaagaaatggttgtgttgatgtgaagaggacaagtctcccac |
431 |
Q |
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| T |
38248217 |
gagggaaatgggtgtgttcatgtgaaaaggacaagtctcccac |
38248175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 289 - 431
Target Start/End: Complemental strand, 38253470 - 38253328
Alignment:
| Q |
289 |
ataaaactagtccattactttgttgggtatatagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaa |
388 |
Q |
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|||| |||||||||||| |||||||||||| | ||||||||| |||| |||||||||| ||||||| ||||| |||||||| ||| ||| || || |
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| T |
38253470 |
ataacactagtccattaagttgttgggtataatgcgagcaacatagatttctttgtttcaggttgagtatgaagttaaatcttgcagcatagatcaaaag |
38253371 |
T |
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| Q |
389 |
gaaagaaatggttgtgttgatgtgaagaggacaagtctcccac |
431 |
Q |
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| T |
38253370 |
gagggaaatgggtgtgttcatgtaaaaaggacaagtctcccac |
38253328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 284 - 431
Target Start/End: Complemental strand, 17454708 - 17454557
Alignment:
| Q |
284 |
aaaacataaaactagtccattactttgttgggtata----tagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcaca |
379 |
Q |
| |
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||||||||| | ||| |||| |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||| ||||| |
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| T |
17454708 |
aaaacataacaacagttcatttctttgttgggtataattatagtgagcaacatgaatttctttgtttcagattgagtatcaagttgaatcttgcagcaca |
17454609 |
T |
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| Q |
380 |
gaccataaagaaagaaatggttgtgttgatgtgaagaggacaagtctcccac |
431 |
Q |
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|||||| | || |||||||||||||| |||||||||||||||||||||||| |
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| T |
17454608 |
gaccatgaggagggaaatggttgtgttcatgtgaagaggacaagtctcccac |
17454557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 310 - 431
Target Start/End: Complemental strand, 17433600 - 17433478
Alignment:
| Q |
310 |
gttgggtat-atagtgagcaacatgaatttatttgtttcagactgagtatcaagttgaatcttgcggcacagaccataaagaaagaaatggttgtgttga |
408 |
Q |
| |
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||||||||| ||||||||||||||| |||| ||||||||||| |||||||||||||||||||||| ||| ||||||| | || ||||||||||||| | |
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| T |
17433600 |
gttgggtattatagtgagcaacatggatttctttgtttcagattgagtatcaagttgaatcttgcagcagagaccatgaggaggaaaatggttgtgttca |
17433501 |
T |
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| Q |
409 |
tgtgaagaggacaagtctcccac |
431 |
Q |
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||||||||||||||||||||||| |
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| T |
17433500 |
tgtgaagaggacaagtctcccac |
17433478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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