View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6329_high_1 (Length: 547)
Name: NF6329_high_1
Description: NF6329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6329_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 11 - 531
Target Start/End: Original strand, 31948754 - 31949277
Alignment:
| Q |
11 |
cagagattgacagagttgttagaagggatttgattaacttgagaagcttccacatggagtatgacatgtgctatgtgagttgttatacagtcaaactgtg |
110 |
Q |
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| T |
31948754 |
cagagattgacagagttgttagaagggatttgattaacttgagaatcttccacatggagtatgacatgtgctatgtgagttgttatacagtcaaactgtg |
31948853 |
T |
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| Q |
111 |
tttttgtttaatgtgttatatgccatattgtttagttcattggaacaagatttccattgaaacacgttcttgaaggtcaataaatcccttatttattcca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31948854 |
tttttgtttaatgtgttatatgccatattgtttagttcattggaacaagatttccattgaaacacgttcttgaaggtcaataaatcccttatttattcca |
31948953 |
T |
|
| Q |
211 |
tatctggttggagccttagttagttgctataatggatgatactccatttgatgtatattatgatatgttaaacttgaaatcatttaattactttgcaact |
310 |
Q |
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| T |
31948954 |
tatctggttggagccttagttagttgctataatggatgatactccatttgatgtatattatgatatgttaaacttgaaatcatttaattactttgcaact |
31949053 |
T |
|
| Q |
311 |
gactcacgtaccaaagtatttgctcactgatgagtgtttgtgtagcgt-----aagggaaggcttccttcttcgtttgcaagagggtttggtctacaagt |
405 |
Q |
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| T |
31949054 |
gactcacgtaccaaagtatttgctcactgatgagtgtttgtgtagcgtaagggaagggaaggcttccttcttcgtttgcaagagggtttggtctacaagt |
31949153 |
T |
|
| Q |
406 |
tgcttcgtttgtgttgttacgtgatccgaaccagaatgaggctaaggtagctattgnnnnnnngaagaacgggagggtttattttactgacggttggaca |
505 |
Q |
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| T |
31949154 |
tgcttcgtttgtgttgttacgtgatccgaaccagaatgaggttaaggtagctattg--aaaaagaagaacgggagggtttattttactgatggttggaca |
31949251 |
T |
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| Q |
506 |
tttttaaagagctttaatgggatttt |
531 |
Q |
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| T |
31949252 |
tttttaaagagctttaatgggatttt |
31949277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 445
Target Start/End: Complemental strand, 42091970 - 42091905
Alignment:
| Q |
380 |
tttgcaagagggtttggtctacaagttgcttcgtttgtgttgttacgtgatccgaaccagaatgag |
445 |
Q |
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| T |
42091970 |
tttgcaagagggtttggtttgcaagttggtccttttgtgatattgcgtgatccaaaccagaatgag |
42091905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 94
Target Start/End: Complemental strand, 20955182 - 20955099
Alignment:
| Q |
11 |
cagagattgacagagttgttagaagggatttgattaacttgagaagcttccacatggagtatgacatgtgctatgtgagttgtt |
94 |
Q |
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| T |
20955182 |
cagagattgacagaggtgttaggagccacttgattaacatgtgaaactttcacatggagtaagacatatgctatgtgagttgtt |
20955099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 337138 - 337218
Alignment:
| Q |
14 |
agattgacagagttgttagaagggatttgattaacttgagaagcttccacatggagtatgacatgtgctatgtgagttgtt |
94 |
Q |
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| T |
337138 |
agattgacagaggtgttaggagggacttgattaacatgcaaaccttttacatggagtatgacatatgctatgtgatttgtt |
337218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 12 - 82
Target Start/End: Complemental strand, 27511144 - 27511074
Alignment:
| Q |
12 |
agagattgacagagttgttagaagggatttgattaacttgagaagcttccacatggagtatgacatgtgct |
82 |
Q |
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|||||||||||||| ||||| |||||| || ||||| ||||||| || |||||||||||||||||||||| |
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| T |
27511144 |
agagattgacagagctgttataagggacttaattaatttgagaacgtttcacatggagtatgacatgtgct |
27511074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 531
Target Start/End: Complemental strand, 27510752 - 27510706
Alignment:
| Q |
485 |
tattttactgacggttggacatttttaaagagctttaatgggatttt |
531 |
Q |
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| T |
27510752 |
tattttactgacggttggacatttttaaagaattttaatgggctttt |
27510706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 515
Target Start/End: Original strand, 39210238 - 39210268
Alignment:
| Q |
485 |
tattttactgacggttggacatttttaaaga |
515 |
Q |
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| T |
39210238 |
tattttactgacggttggacatttttaaaga |
39210268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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