View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6329_high_3 (Length: 501)
Name: NF6329_high_3
Description: NF6329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6329_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 19 - 492
Target Start/End: Complemental strand, 33635536 - 33635063
Alignment:
| Q |
19 |
aactcagtgtcaatctaaacatgcatttaagtttgtttttattggttaccatagtacgcattagnnnnnnnnnnnatattatatataagatatacacctc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
33635536 |
aactcagtgtcaatctaaacatgcatttaagtttgtttttattggttaccatagtacgcattagttttttttttattactatatataagatatacacctc |
33635437 |
T |
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| Q |
119 |
attctaacttgtgtttgtgtggcattgcagcttcctacttgaaatcatggaccctattcaacaaacaaaagaaaaatggaagggcaaagccaaaacagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33635436 |
attctaacttgtgtttgtgtggcattgcagcttcctacttgaaatcatggaccctattcaacaaacaaaagaaaaatggaagggcaaagccaaaacagaa |
33635337 |
T |
|
| Q |
219 |
gtggtaggatgcaaagctgaacaagtatggccacttttggaggannnnnnnggccttgacaaatggtttccaactctctctacatgcattccaattgaag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33635336 |
gtggtaggatgcaaagctgaacaagtatggccacttttggaggatttttttggccttgacaaatggtttccaactctctctacatgcattccaattgaag |
33635237 |
T |
|
| Q |
319 |
gaatatccggcaaacccggttgtgtccgattttgtgccggtttcaagactcctgtggatgaagatggcaaacaatctttgaattggacaaagcagaaact |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33635236 |
gaatatccggcaaacccggttgtgtccgattttgtgccggtttcaagactcctgtggatgaagatggcaaacaatctttgaattggacaaagcagaaact |
33635137 |
T |
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| Q |
419 |
tctttcaattgatccaattcaaagggtgtttacctatgcaattattgatggaaatgttggattttattcctatg |
492 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33635136 |
tctttcaattaatccaattcaaagggtgtttacctatgcaattattgatggaaatgttggattttattcctatg |
33635063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 103 - 492
Target Start/End: Complemental strand, 33650601 - 33650211
Alignment:
| Q |
103 |
ataagatatacacctcattctaacttgtgtttgtgtggcattgcagcttccta-cttgaaatcatggaccctattcaacaaacaaaagaaaaatggaagg |
201 |
Q |
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|||||||||| | |||| |||||||||||||||| ||||||||| ||||||| |||||||||||| || |||||||||||||||||||||||||| | | |
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| T |
33650601 |
ataagatatataaatcatcctaacttgtgtttgtgaggcattgcaacttcctaacttgaaatcatgaacactattcaacaaacaaaagaaaaatggcaag |
33650502 |
T |
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| Q |
202 |
gcaaagccaaaacagaagtggtaggatgcaaagctgaacaagtatggccacttttggaggannnnnnnggccttgacaaatggtttccaactctctctac |
301 |
Q |
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|||| |||||||| ||| | |||||||||||||| || ||||||||||| || ||||| || || ||||| ||||||||||||||||||||| |
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| T |
33650501 |
gcaaggccaaaactgaattagtaggatgcaaagcagaccaagtatggcctctcttggaagatttttttggtcttgataaatggtttccaactctctctta |
33650402 |
T |
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| Q |
302 |
atgcattccaattgaaggaatatccggcaaacccggttgtgtccgattttgtgccggtttcaagactcctgtggatgaagatggcaaacaatctttgaat |
401 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||| || ||||||||||| |||||| |
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| T |
33650401 |
ttgcattccagttgaaggaatatccggcaaacccggttgtgtccgattctgtgccggtttcaagactccagttgataaacatggcaaacaaaacttgaat |
33650302 |
T |
|
| Q |
402 |
tggacaaagcagaaacttctttcaattgatccaattcaaagggtgtttacctatgcaattattgatggaaatgttggattttattcctatg |
492 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |
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| T |
33650301 |
tggactaagcagaaacttctttcaattgatccaattcaaagggtgtttagctatgcaattgttgatggaaatgttggatttcattcctatg |
33650211 |
T |
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