View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6329_high_4 (Length: 354)
Name: NF6329_high_4
Description: NF6329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6329_high_4 |
 | |
|
| [»] scaffold0925 (1 HSPs) |
| | |
|
| [»] scaffold0003 (1 HSPs) |
| | |
|
| [»] scaffold0081 (1 HSPs) |
| | |
|
| [»] scaffold0116 (2 HSPs) |
| | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
|
| [»] scaffold0253 (2 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 11 - 339
Target Start/End: Original strand, 18617520 - 18617848
Alignment:
| Q |
11 |
caaaggtaaagggaattactactaataagttttaaagattttgcataagttatatgctaaattgtttatgtgagtaaataactttatctgtgagagttaa |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18617520 |
caaaggtaaagggaattactactaataagttttaaagattttgcataagttatatgctaaattgtttatgtgagtaaataactttatctgtgagagttaa |
18617619 |
T |
|
| Q |
111 |
ttgaggaaccactgactgacgtttgggaaattaatctggcaacccaaacgttgtacttcaccaaacttgtttgtattactgtgggacttggtggtcagcc |
210 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18617620 |
ttgaggaaccactgaatgacgtttgggaaattaatatggcatcccaaacgttgtacttcaccaaacttgtttgtattactatgggacttggtggtcagcc |
18617719 |
T |
|
| Q |
211 |
gtttagatctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccacatgaacca |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
18617720 |
gtttagatctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgttccacatgaacca |
18617819 |
T |
|
| Q |
311 |
gtaggaccagagccacatgagccttttgt |
339 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
18617820 |
gtaggaccagagccacatgagccttttgt |
18617848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 132 - 339
Target Start/End: Complemental strand, 19240055 - 19239848
Alignment:
| Q |
132 |
tttgggaaattaatctggcaacccaaacgttgtacttcaccaaacttgtttgtattactgtgggacttggtggtcagccgtttagatctattgttactca |
231 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||| |||||||||| |||||| || |||||||||| |||||| || ||||||| ||||||| |
|
|
| T |
19240055 |
tttgggaaataaatctggcaacccaaacattgtacttcacctaacttgtttggattactatgagacttggtggacagccgactatatctattattactca |
19239956 |
T |
|
| Q |
232 |
taagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccacatgaaccagtaggaccagagccacatgag |
331 |
Q |
| |
|
| |||| || || || ||||||||||| || |||||||||||| |||||||||||||||||||||||||| || || ||||||||||||||||| |||| |
|
|
| T |
19239955 |
tgagactattgaaataattttaccattgtagaggttgtacttagctcttcatgacatgggtgttgtcccacctggactagtaggaccagagccacgtgag |
19239856 |
T |
|
| Q |
332 |
ccttttgt |
339 |
Q |
| |
|
|| ||||| |
|
|
| T |
19239855 |
ccctttgt |
19239848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 19241568 - 19241465
Alignment:
| Q |
11 |
caaaggtaaagggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagtt |
108 |
Q |
| |
|
||||||||| |||||||||||||||||| | |||||||||||||||||||||| |||| ||||| | ||||||| ||||||||| ||| |||||||||| |
|
|
| T |
19241568 |
caaaggtaaggggaattactactaataaatgttaaagattttgcataagttatgtgcttaattgattatatgtgattaaataactctatttgtgagagtt |
19241469 |
T |
|
| Q |
109 |
aatt |
112 |
Q |
| |
|
|||| |
|
|
| T |
19241468 |
aatt |
19241465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 21185471 - 21185370
Alignment:
| Q |
13 |
aaggtaaagggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaa |
110 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || || | ||||||| ||||||||| || |||||||||||| |
|
|
| T |
21185471 |
aaggtaaggggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtgactaaataactctacttgtgagagttaa |
21185372 |
T |
|
| Q |
111 |
tt |
112 |
Q |
| |
|
|| |
|
|
| T |
21185371 |
tt |
21185370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 21629528 - 21629427
Alignment:
| Q |
13 |
aaggtaaagggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaa |
110 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| || || | ||||||||| ||||||| || |||||||||||| |
|
|
| T |
21629528 |
aaggtaaggggaattactactaataaattttaaagattttgcataagttatgtgcttaagtgattatatgtgagtcaataactctacttgtgagagttaa |
21629429 |
T |
|
| Q |
111 |
tt |
112 |
Q |
| |
|
|| |
|
|
| T |
21629428 |
tt |
21629427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 21620808 - 21620725
Alignment:
| Q |
219 |
ctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccac |
302 |
Q |
| |
|
|||||||||||||| | |||| |||||||||| ||||||| ||| |||||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
21620808 |
ctattgttactcatgaaaccacagagatgattctaccatttcagaggttgtacctagctctccatgacatgggtgttgtcccac |
21620725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 302
Target Start/End: Complemental strand, 21628267 - 21628184
Alignment:
| Q |
219 |
ctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccac |
302 |
Q |
| |
|
|||||||||||| | | |||| |||||||||| ||||||| ||| |||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
21628267 |
ctattgttactcgtgaaaccacagagatgattctaccatttcagaggttgtacctagctccccatgacatgggtgttgtcccac |
21628184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 9688135 - 9688092
Alignment:
| Q |
11 |
caaaggtaaagggaattactactaataagttttaaagattttgca |
55 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
9688135 |
caaaggtaaagg-aattaccactaataagttttaaagattttgca |
9688092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 10232309 - 10232410
Alignment:
| Q |
13 |
aaggtaaagggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaa |
110 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||| |||| || || | ||||||||||||||||| || |||||||||||| |
|
|
| T |
10232309 |
aaggtaaggggaattactactaataaattttaaagattttgcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaa |
10232408 |
T |
|
| Q |
111 |
tt |
112 |
Q |
| |
|
|| |
|
|
| T |
10232409 |
tt |
10232410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0925 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0925
Description:
Target: scaffold0925; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 112
Target Start/End: Original strand, 124 - 217
Alignment:
| Q |
21 |
gggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| || || | ||||||||||||||||| || ||| |||||||||| |
|
|
| T |
124 |
gggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtaagagttaatt |
217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 112
Target Start/End: Complemental strand, 22389377 - 22389284
Alignment:
| Q |
21 |
gggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaatt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| || || | ||||||||||||||||| || ||| |||||||||| |
|
|
| T |
22389377 |
gggaattactactaataagttttaaagattttgcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtaagagttaatt |
22389284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 141776 - 141890
Alignment:
| Q |
219 |
ctattgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccacatgaaccagtaggacc |
318 |
Q |
| |
|
|||||||||||||| | |||| |||||||||||||||||| ||| |||||||| ||| ||| |||||||| ||||||||||| ||| |||||||| |
|
|
| T |
141776 |
ctattgttactcatgaaaccacagagatgattttaccatttcagaggttgtacctagctctccatgacataggtgttgtccc------acccgtaggacc |
141869 |
T |
|
| Q |
319 |
agagccacatgagccttttgt |
339 |
Q |
| |
|
||| ||||||||||| ||||| |
|
|
| T |
141870 |
agacccacatgagccctttgt |
141890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0081 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0081
Description:
Target: scaffold0081; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 1724 - 1623
Alignment:
| Q |
13 |
aaggtaaagggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaa |
110 |
Q |
| |
|
||||||| | ||||||||||||||| ||||||||||||||||||||||||| |||| || || | ||| ||||||||||||| || |||||||||||| |
|
|
| T |
1724 |
aaggtaaggagaattactactaatatgttttaaagattttgcataagttatgtgcttaagtgattatatctgagtaaataactctacttgtgagagttaa |
1625 |
T |
|
| Q |
111 |
tt |
112 |
Q |
| |
|
|| |
|
|
| T |
1624 |
tt |
1623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0116
Description:
Target: scaffold0116; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 32397 - 32452
Alignment:
| Q |
13 |
aaggtaaagggaattactactaataagttttaaagattttgcataagttatatgct |
68 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
32397 |
aaggtaaggggaattactactaataagttttaaagattttgtataagttatgtgct |
32452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0116; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 41757 - 41801
Alignment:
| Q |
24 |
aattactactaataagttttaaagattttgcataagttatatgct |
68 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
41757 |
aattactactaataaattttaaagattttgcataagttatgtgct |
41801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 302
Target Start/End: Complemental strand, 393027 - 392948
Alignment:
| Q |
223 |
tgttactcataagaccatagagatgattttaccattacaggggttgtacttagatcttcatgacatgggtgttgtcccac |
302 |
Q |
| |
|
|||||||||| |||||| |||||||||| ||||||| || |||||||| ||| ||| |||||||||||||||||||||| |
|
|
| T |
393027 |
tgttactcatgagaccacagagatgattctaccattgtagaggttgtacctagctctccatgacatgggtgttgtcccac |
392948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Complemental strand, 396761 - 396720
Alignment:
| Q |
21 |
gggaattactactaataagttttaaagattttgcataagttat |
63 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
396761 |
gggaattactactaataagttttaaaga-tttgcataagttat |
396720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0253 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0253
Description:
Target: scaffold0253; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 7942 - 7841
Alignment:
| Q |
13 |
aaggtaaagggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaa |
110 |
Q |
| |
|
||||||| | ||||||||| ||||| |||||||||||||| |||||||||| |||| || || | ||||||||||||||||| || |||||||||||| |
|
|
| T |
7942 |
aaggtaaggagaattactaataatatgttttaaagatttttcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaa |
7843 |
T |
|
| Q |
111 |
tt |
112 |
Q |
| |
|
|| |
|
|
| T |
7842 |
tt |
7841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0253; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 17367 - 17266
Alignment:
| Q |
13 |
aaggtaaagggaattactactaataagttttaaagattttgcataagttatatgctaaattg--tttatgtgagtaaataactttatctgtgagagttaa |
110 |
Q |
| |
|
||||||| | ||||||||| ||||| |||||||||||||| |||||||||| |||| || || | ||||||||||||||||| || |||||||||||| |
|
|
| T |
17367 |
aaggtaaggagaattactaataatatgttttaaagatttttcataagttatgtgcttaagtgattatatgtgagtaaataactctacttgtgagagttaa |
17268 |
T |
|
| Q |
111 |
tt |
112 |
Q |
| |
|
|| |
|
|
| T |
17267 |
tt |
17266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University