View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6329_low_10 (Length: 298)

Name: NF6329_low_10
Description: NF6329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6329_low_10
NF6329_low_10
[»] chr3 (14 HSPs)
chr3 (11-280)||(3745537-3745806)
chr3 (88-149)||(4142515-4142576)
chr3 (88-149)||(4158325-4158386)
chr3 (88-149)||(3754212-3754273)
chr3 (15-147)||(2686698-2686827)
chr3 (17-66)||(4142595-4142644)
chr3 (17-66)||(4158405-4158454)
chr3 (15-67)||(2697189-2697241)
chr3 (19-55)||(12132625-12132661)
chr3 (15-53)||(955929-955967)
chr3 (17-145)||(2441559-2441684)
chr3 (15-52)||(1941033-1941070)
chr3 (13-53)||(1004032-1004072)
chr3 (13-53)||(1022029-1022069)
[»] chr7 (1 HSPs)
chr7 (19-55)||(1078662-1078698)
[»] chr5 (7 HSPs)
chr5 (15-67)||(1428183-1428235)
chr5 (15-66)||(2067534-2067585)
chr5 (15-53)||(23754492-23754530)
chr5 (15-53)||(23774526-23774564)
chr5 (15-53)||(23819947-23819985)
chr5 (15-53)||(23861479-23861517)
chr5 (15-67)||(41973928-41973980)
[»] chr8 (2 HSPs)
chr8 (15-65)||(31144843-31144893)
chr8 (15-67)||(19727420-19727472)
[»] chr4 (2 HSPs)
chr4 (95-145)||(20020151-20020201)
chr4 (15-51)||(20020248-20020284)
[»] scaffold0200 (1 HSPs)
scaffold0200 (15-67)||(1236-1288)
[»] chr2 (1 HSPs)
chr2 (203-231)||(11237414-11237442)


Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 280
Target Start/End: Original strand, 3745537 - 3745806
Alignment:
Q  11 atactgtggaacccttctattagaaaattcaaggagttgcccctttttcaaaagccatatgtgcgcaatcatattcacatgtcgtttggcttcggttata 110  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745537 atactgtggaacccctctattagaaaattcaaggagttgcccctttttcaaaagccatatgtgcgcaatcatattcacatgtcgtttggcttcggttata 3745636  T
Q  111 attcttcaaaggataattacaaggtggttgttgttcttgtgtacgttatctaccgggatatcaaaactgatatcaaaactgaagtagaagttcatacttt 210  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3745637 attcttcaaaggataattacaaggtggttgttgttcttgtgtactttatctaccgggatatcaaaactgatatcaaaactgaagtagaagttcatacttt 3745736  T
Q  211 gggtaccaatttttggagaagaagcattcaggagtatcctcttggcggtgctcctgttgagcgatagggg 280  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||    
T  3745737 gggtaccaatttttggagaagaagcactcaggagtatcctcttggcggtgctccttttgagcgatcgggg 3745806  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 4142576 - 4142515
Alignment:
Q  88 catgtcgtttggcttcggttataattcttcaaaggataattacaaggtggttgttgttcttg 149  Q
    |||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||||    
T  4142576 catgacgtttggctttggctatgattcttcaaaggataattacaaggtggttgttgttcttg 4142515  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 4158386 - 4158325
Alignment:
Q  88 catgtcgtttggcttcggttataattcttcaaaggataattacaaggtggttgttgttcttg 149  Q
    |||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||||    
T  4158386 catgacgtttggctttggctatgattcttcaaaggataattacaaggtggttgttgttcttg 4158325  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 3754212 - 3754273
Alignment:
Q  88 catgtcgtttggcttcggttataattcttcaaaggataattacaaggtggttgttgttcttg 149  Q
    |||| |||||||||| || ||| |||||| ||| ||||||||||||||||||||||||||||    
T  3754212 catgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgttcttg 3754273  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 2686827 - 2686698
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccctttttcaaaagccatatgtgcgcaatcatattcacatgtcgtttggcttcggttataattc 114  Q
    |||||||||||||| |  ||||||| || ||||||||||||||| |||||||| | ||    | |||| ||   ||||||||||||||||| ||  ||||    
T  2686827 tgtggaacccttctttacgaaaatttaaagagttgcccctttttgaaaagccaaaggtt---actcatcttagaatgtcgtttggcttcggctacgattc 2686731  T
Q  115 ttcaaaggataattacaaggtggttgttgttct 147  Q
    ||  ||||| |||||||||||| ||||||||||    
T  2686730 ttttaaggagaattacaaggtgattgttgttct 2686698  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 4142644 - 4142595
Alignment:
Q  17 tggaacccttctattagaaaattcaaggagttgcccctttttcaaaagcc 66  Q
    ||||||||||| |  ||||||||||||||||||||||||||| |||||||    
T  4142644 tggaacccttccacaagaaaattcaaggagttgcccctttttgaaaagcc 4142595  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 66
Target Start/End: Complemental strand, 4158454 - 4158405
Alignment:
Q  17 tggaacccttctattagaaaattcaaggagttgcccctttttcaaaagcc 66  Q
    ||||||||||| |  ||||||||||||||||||||||||||| |||||||    
T  4158454 tggaacccttcaacaagaaaattcaaggagttgcccctttttgaaaagcc 4158405  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 2697241 - 2697189
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccctttttcaaaagcca 67  Q
    ||||||||||||| ||||||||||| ||||| ||||||  |||||||||||||    
T  2697241 tgtggaacccttcaattagaaaatttaaggaattgccctcttttcaaaagcca 2697189  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 12132625 - 12132661
Alignment:
Q  19 gaacccttctattagaaaattcaaggagttgcccctt 55  Q
    ||||||||| |||||||||||||||||||||||||||    
T  12132625 gaacccttccattagaaaattcaaggagttgcccctt 12132661  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 955929 - 955967
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccc 53  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  955929 tgtgtaacccttctattagaaaattcaaggatttgcccc 955967  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 2441559 - 2441684
Alignment:
Q  17 tggaacccttctattagaaaattcaaggagttgcccctttttcaaaagccatatgtgcgcaatcatattcacatgtcgtttggcttcggttataattctt 116  Q
    ||||||||||| ||||||||| | |||||||| ||||| |||||||||||| ||  | |   |   | ||||||| |||||||||| || ||| ||||||    
T  2441559 tggaacccttccattagaaaaattaaggagtttcccctatttcaaaagccaaattggag---tttcactcacatggcgtttggctttggctatgattctt 2441655  T
Q  117 caaaggataattacaaggtggttgttgtt 145  Q
      || ||||||||||| ||||||||||||    
T  2441656 ttaatgataattacaaagtggttgttgtt 2441684  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 52
Target Start/End: Complemental strand, 1941070 - 1941033
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgccc 52  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  1941070 tgtggaacccttccattagaaaattcaaggaattgccc 1941033  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 1004032 - 1004072
Alignment:
Q  13 actgtggaacccttctattagaaaattcaaggagttgcccc 53  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  1004032 actgtggaacccttccattagaaaattaaaggaattgcccc 1004072  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 1022029 - 1022069
Alignment:
Q  13 actgtggaacccttctattagaaaattcaaggagttgcccc 53  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  1022029 actgtggaacccttccattagaaaattaaaggaattgcccc 1022069  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 1078698 - 1078662
Alignment:
Q  19 gaacccttctattagaaaattcaaggagttgcccctt 55  Q
    ||||||||| |||||||||||||||||||||||||||    
T  1078698 gaacccttccattagaaaattcaaggagttgcccctt 1078662  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 1428235 - 1428183
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccctttttcaaaagcca 67  Q
    ||||||||||| | ||||||||||||| |||||||||||||||  ||||||||    
T  1428235 tgtggaaccctaccattagaaaattcagggagttgccccttttaaaaaagcca 1428183  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 2067585 - 2067534
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccctttttcaaaagcc 66  Q
    |||| |||||||||||||||| | ||||||||||||| |||||| |||||||    
T  2067585 tgtgtaacccttctattagaacaatcaaggagttgccactttttgaaaagcc 2067534  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 23754530 - 23754492
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccc 53  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  23754530 tgtggaacccttccattagaaaattcaaggaattgcccc 23754492  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 23774564 - 23774526
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccc 53  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  23774564 tgtggaacccttccattagaaaattcaaggaattgcccc 23774526  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 23819985 - 23819947
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccc 53  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  23819985 tgtggaacccttccattagaaaattcaaggaattgcccc 23819947  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Complemental strand, 23861517 - 23861479
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccc 53  Q
    ||||||||||||| ||||||||||||||||| |||||||    
T  23861517 tgtggaacccttccattagaaaattcaaggaattgcccc 23861479  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 41973980 - 41973928
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccctttttcaaaagcca 67  Q
    ||||||||||||| | ||||||||||||||| ||||||| || ||||| ||||    
T  41973980 tgtggaacccttccactagaaaattcaaggaattgcccccttatcaaaggcca 41973928  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 65
Target Start/End: Complemental strand, 31144893 - 31144843
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccctttttcaaaagc 65  Q
    ||||||||||||| ||||||||||||||||| ||||||  | |||||||||    
T  31144893 tgtggaacccttccattagaaaattcaaggaattgccctatcttcaaaagc 31144843  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 19727420 - 19727472
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccctttttcaaaagcca 67  Q
    |||||||||||||  |||||||||||||||| ||||||| | || ||||||||    
T  19727420 tgtggaacccttccgttagaaaattcaaggacttgccccctcttgaaaagcca 19727472  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 20020201 - 20020151
Alignment:
Q  95 tttggcttcggttataattcttcaaaggataattacaaggtggttgttgtt 145  Q
    |||||||| || ||| ||||||||| ||| |||||||||||||||||||||    
T  20020201 tttggctttggctatgattcttcaacggacaattacaaggtggttgttgtt 20020151  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 51
Target Start/End: Complemental strand, 20020284 - 20020248
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcc 51  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  20020284 tgtggaacccttccattagaaaattcaaggaattgcc 20020248  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 1288 - 1236
Alignment:
Q  15 tgtggaacccttctattagaaaattcaaggagttgcccctttttcaaaagcca 67  Q
    ||||||||||||| | ||||||||||||||| ||||||| || ||||| ||||    
T  1288 tgtggaacccttccactagaaaattcaaggaattgcccccttatcaaaggcca 1236  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 231
Target Start/End: Original strand, 11237414 - 11237442
Alignment:
Q  203 catactttgggtaccaatttttggagaag 231  Q
    |||||||||||||||||||||||||||||    
T  11237414 catactttgggtaccaatttttggagaag 11237442  T

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