View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6329_low_14 (Length: 238)
Name: NF6329_low_14
Description: NF6329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6329_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 954619 - 954445
Alignment:
| Q |
1 |
tttttatttgacatcattaacatgtgttcttagaacatatcttagcattttcctttaatatattactgtaaaatatcttttagtagcagattaacatgtg |
100 |
Q |
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| T |
954619 |
tttttatttgacatcattaatacgtgttcttagagcacatcttagcattttcctttaatatattactgtaaaatatcttttagtagcatattaacatgtg |
954520 |
T |
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| Q |
101 |
tctgcttattcatcatataagtgaaactttagtcattaggctacttgataaataagattaacatgtattcaaaag |
175 |
Q |
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| T |
954519 |
tctgcttattcattatataaatgaaattttagtcattagactatttgataaataagattaacatgtattcaaaag |
954445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 192 - 223
Target Start/End: Complemental strand, 954426 - 954395
Alignment:
| Q |
192 |
gacaaaatgtattcaaaagtatgtatagaagt |
223 |
Q |
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| T |
954426 |
gacaaaatgtattcaaaagtatgtatagaagt |
954395 |
T |
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