View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6329_low_16 (Length: 202)
Name: NF6329_low_16
Description: NF6329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6329_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 178; Significance: 3e-96; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 33080831 - 33080646
Alignment:
| Q |
1 |
ttaattaacggaaatatatactgtacagtagctcttttctatttttgttgtttttctctcttctgaaaccatttatagtttatactttgaatcttgcttc |
100 |
Q |
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| T |
33080831 |
ttaattaacggaaatatatactgtacagtagctcttttctatttttgttgtttttctcttttctgaaaccatttatagtttatactttgaatcttgcttc |
33080732 |
T |
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| Q |
101 |
ttacctagaatactattattattttacactccatgtttcctaaaatgattttcaaccaagatgctctcacttggtgaagtagcaaa |
186 |
Q |
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| T |
33080731 |
ttacctagaatattattattattttacactccatgtttcctaaaatgattttcaaccaagatgctctcacttggtgaagtagcaaa |
33080646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 83 - 186
Target Start/End: Complemental strand, 41514015 - 41513909
Alignment:
| Q |
83 |
tactttgaatcttgcttcttacctagaat---actattattattttacactccatgtttcctaaaatgattttcaaccaagatgctctcacttggtgaag |
179 |
Q |
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|||||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
41514015 |
tactttgagtcttgcttcttacctagaatgttattattattattttacactccacgtttcctaaaacgattttcaaccaagatgctctcacttggtgaag |
41513916 |
T |
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| Q |
180 |
tagcaaa |
186 |
Q |
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||||||| |
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| T |
41513915 |
tagcaaa |
41513909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 41523044 - 41522873
Alignment:
| Q |
31 |
gctcttttctatttttgttgtttttctctc-ttctgaaaccatttatagtttatactttgaa------------tcttgcttcttacctagaa---tact |
114 |
Q |
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|||||||||||||| |||||||||| || |||||||||||||||| |||||||||||||| ||||||||||||||||||| || | |
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| T |
41523044 |
gctcttttctatttatgttgttttttcatccttctgaaaccatttattgtttatactttgaagcttactttgagtcttgcttcttacctagaatgttatt |
41522945 |
T |
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| Q |
115 |
attattattttacactccatgtttcctaaaatgattttcaaccaagatgctctcacttggtgaagtagcaaa |
186 |
Q |
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||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
41522944 |
attattattttacactccacgtttcctaatacgattttcaaccaagatgctctcacttggtgaagtagcaaa |
41522873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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