View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6329_low_2 (Length: 535)
Name: NF6329_low_2
Description: NF6329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6329_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 143 - 521
Target Start/End: Original strand, 29631638 - 29632016
Alignment:
| Q |
143 |
ctcagcagctagctattgcaatacaacggactgtgataacgctggaaacgacaaacacacgtcgttttcagatctcggactctcggaatggatggtgcgg |
242 |
Q |
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| T |
29631638 |
ctcagcagctagctattgtaatacaacggactgtgataacgctggaaacgacaaacacatgtcgttttcagatctaggactctcggaatggatggtgcgg |
29631737 |
T |
|
| Q |
243 |
ggttgcgataaactcgggatgcaatctcctcggcccgtgcaacgacactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactg |
342 |
Q |
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| T |
29631738 |
ggttgcgataaactcgggatgcaatctccgcggcccgtgcaacgacactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactg |
29631837 |
T |
|
| Q |
343 |
gtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcctcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgcgagct |
442 |
Q |
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| T |
29631838 |
gtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcctcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgcgagct |
29631937 |
T |
|
| Q |
443 |
tgcggttcagctggctcaccagttttggatccttgggtcctcgctccgcctcatccttacggtggttgtgggtggttta |
521 |
Q |
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| T |
29631938 |
tgcggttcagctggctcaccagttttggatccttgggtcctcgctccgcctcatccttacggtggttgtgggtggttta |
29632016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 207 - 516
Target Start/End: Original strand, 29630583 - 29630904
Alignment:
| Q |
207 |
ttttcagatctcggactctcggaatggatggtgcggggttgcgataaactcgggatgcaatctcctcggcccgtgcaacgacactgcattccaaaggttc |
306 |
Q |
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| T |
29630583 |
ttttccgatctcggactctcggaatggacggtgcagaattgcaagaagctcgggatgcaaacaccgcggcgcgtgcaacaacactgcattcctaaggttc |
29630682 |
T |
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| Q |
307 |
tagaaggccgtcatgtaattggaattgataaaactggtagtggtaaaacagcagcttttgcgcttcctattcttcaacgcctcggtga------gactcc |
400 |
Q |
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| T |
29630683 |
tagaaggccgtgatgtggttggaatcgatgagactggtagtggtaaaacggcagcttttgcgcttcccattcttcaacgcctcgccgagcatccgaaacc |
29630782 |
T |
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| Q |
401 |
ttttgg------tgtgtttgctcttgtactgacgcccacccgcgagcttgcggttcagctggctcaccagttttggatccttgggtcctcgctccgcctc |
494 |
Q |
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| T |
29630783 |
tttcggtgtgtatgtgtttgctctcgtgctgacgcccacgcgcgagcttgcgattcagctggcagaccagtttttggcccttgggtcctcgctcctcccc |
29630882 |
T |
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| Q |
495 |
atccttacggtggttgtgggtg |
516 |
Q |
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| T |
29630883 |
agccttacggttgttgtgggtg |
29630904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 29631497 - 29631603
Alignment:
| Q |
1 |
aatggattctaaacctggcagccgcacatggatttctcccataaccagtgagtcgcactctctcctttccctttcttccttcctggtcaaccgtaacagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29631497 |
aatggattctaaacctggcagccgcacatggatttctcccataaccagtgagtcgcactctctcctttccctttcttccttcctggtcaaccgtaacagc |
29631596 |
T |
|
| Q |
101 |
ttacttc |
107 |
Q |
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||||||| |
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| T |
29631597 |
ttacttc |
29631603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 28390281 - 28390248
Alignment:
| Q |
206 |
gttttcagatctcggactctcggaatggatggtg |
239 |
Q |
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| T |
28390281 |
gttttcagatctcggactctcagaatggatggtg |
28390248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 253 - 457
Target Start/End: Complemental strand, 27664101 - 27663897
Alignment:
| Q |
253 |
aactcgggatgcaatctcctcggcccgtgcaacgacactgcattccaaaggttctagaaggccgtcatgtaattggaattgataaaactggtagtggtaa |
352 |
Q |
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||||||| ||| || |||| |||| |||||| | ||||||||| || || |||||| |||||||||||||| ||||| || ||||||| || ||||| |
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| T |
27664101 |
aactcggaatgaaaactccacggcgcgtgcagcaacactgcatccctcagattctagctggccgtcatgtaatcggaatcgaccaaactggaagcggtaa |
27664002 |
T |
|
| Q |
353 |
aacagcagcttttgcgcttcctattcttcaacgcctcggtgagactccttttggtgtgtttgctcttgtactgacgcccacccgcgagcttgcggttcag |
452 |
Q |
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| T |
27664001 |
aacagcggcatttgcgcttccgattctgcagcggcttgctgaacatacgtttggtgtgtttgcgcttgtggtgacgcccacgcgcgagcttgcgtttcag |
27663902 |
T |
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| Q |
453 |
ctggc |
457 |
Q |
| |
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|||| |
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| T |
27663901 |
ttggc |
27663897 |
T |
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