View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6329_low_5 (Length: 352)
Name: NF6329_low_5
Description: NF6329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6329_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 12 - 335
Target Start/End: Complemental strand, 30437952 - 30437626
Alignment:
| Q |
12 |
gagcacagaggaagaattatgttatctgaattcaaagtagctgtgaagtttgtttagctttgttgtttcgattccttttcttgtttggcagcctgcaaat |
111 |
Q |
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| T |
30437952 |
gagctcagaggaagaattttgttatctgaattcaaagtagctgttaagtttgtttagctttgttgtttcgattccttttcttgtttggcagcctgcaaat |
30437853 |
T |
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| Q |
112 |
actaatttcattgcaaacaaataatacatagattttatcatagatattagatattgataacaaagagttgtgactcctctgcttcatttaatttgcaaaa |
211 |
Q |
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| T |
30437852 |
actaatttcattgcaaacaaataatacatagattttatcatagatattagatattgataacaaagagttgtgactcctctgcttcatttaatttgcaaaa |
30437753 |
T |
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| Q |
212 |
ttctctacac---ctgcaattttgtatgctttgtgaaatatgagagctgaaccgacaatgatgttggtgttgtcggattggtgcgtagaagcattcattg |
308 |
Q |
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| T |
30437752 |
ttctctacaccttctgcaattttgtatgctttgtgaaatatgagagctgaaccgacaatgatgttggtgttgtcggattggtgcgtagaagcattcattg |
30437653 |
T |
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| Q |
309 |
cgacagtgtgaaggtgatcactgtgtt |
335 |
Q |
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| T |
30437652 |
cgacagtgtgaaggtgatcactgtgtt |
30437626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 87 - 324
Target Start/End: Original strand, 18471993 - 18472223
Alignment:
| Q |
87 |
ttttcttgtttggcagcctgcaaatactaatttcattgcaaacaaataatacatagattttatcatagatattagatattgataacaaagagttgtgact |
186 |
Q |
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| T |
18471993 |
ttttcttgtttggcagcctgcaaatactaattgcattgcaaacaaataatataaagattttgtca-------tggatattgagaacaaagaattgtga-- |
18472083 |
T |
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| Q |
187 |
cctctgcttcatttaatttgc-aaaattctctacac---ctgcaattttgtatgctttgtgaaatatgagagctgaaccgacaatgatgttggtgttgtc |
282 |
Q |
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| T |
18472084 |
-ctctgcttcatttaatttgcgaaaatgctccccacattctgc-actttgtatgctttgtgaaatatgtgagctgagctgatagtgacgttggtgttgtc |
18472181 |
T |
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| Q |
283 |
ggattggtgcgtagaagcattcattgcgacagtgtgaaggtg |
324 |
Q |
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| T |
18472182 |
ggactgatgcgtggatacattcattgaaacagtgtgatggtg |
18472223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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