View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6329_low_9 (Length: 311)
Name: NF6329_low_9
Description: NF6329
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6329_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 292
Target Start/End: Original strand, 48932334 - 48932610
Alignment:
| Q |
17 |
caaaggtgatcttgtggaccaaagagtggtacacacaga-acatgctgtggagtttgcagaggatcagggccnnnnnnnctcagagacttcagctttgag |
115 |
Q |
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| T |
48932334 |
caaaggtgatcttgtggaccaaagagtggtacacacagacaaatgctgtggagtttgcagaggatcagggcctttttttctcagagacttcagctttgag |
48932433 |
T |
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| Q |
116 |
tggtgaaaatgtcaactctgcatttttcaaattgcttcaagagattaataaggttgtctcaaaaaggtcgttggaatctaataatggtaagaacaatatt |
215 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48932434 |
tggtgaaaatgtgaactctgcatttttcaaattgcttcaagagattaataaggttgtctcaaaaaggtcgttggaatctaataatggtaagaacaatatt |
48932533 |
T |
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| Q |
216 |
gctacacttaaaggatcaaaaatagatataatttcaggtcctgaattagatattactgaaatgaaggaagtaccttc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48932534 |
gctacacttaaaggatcaaaaatagatataatttcaggtcctgaattagatattactgaaatgaaggaagtaccttc |
48932610 |
T |
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