View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6330_high_1 (Length: 616)
Name: NF6330_high_1
Description: NF6330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6330_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 12 - 404
Target Start/End: Complemental strand, 35915949 - 35915557
Alignment:
| Q |
12 |
atcatcatcagttatatcatcacaaacacaatcttgaacaatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcg |
111 |
Q |
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| T |
35915949 |
atcatcatcagttatatcatcacaaacacaatcttgaacaatactcctccttatttcttgtctcctccttctctcccaagccatatctctcggcttctcg |
35915850 |
T |
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| Q |
112 |
cacatcgatagctgcttcgatagcctcctcctattgttccacgccaccggcgccaatggcatgtgctgcaactcctcctctgattcgcttggtagcggag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
35915849 |
cacatcgatagctgcttcgatagcctcctcctattgttccacgccaccggcgccaatggcatgtgctgcaactcctcctccgattcgcttggtagcggag |
35915750 |
T |
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| Q |
212 |
aagaagatgaagataatgacattttgtcacacttttgctcttctttgttcatagctacaaataattattggatatctttaacaacagattgaaagtgtta |
311 |
Q |
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| T |
35915749 |
aagaagatgaagataatgacattttgtcacacttttgctcttctttgttcatagctacaaataattattgtatatctttaacaacagattgaaagtgtta |
35915650 |
T |
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| Q |
312 |
attttaatttgatgaaaatgatgatggctgaggcagcaagcaagcgggggccgtcttgcgttgcctcgccgcgccgttgaagtggtggtaagt |
404 |
Q |
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| T |
35915649 |
attttaatttgatgaaaatgatgatggctgaggcagcaagcaagcgggggccgtcttgcgttgcctcgccgcgccgttgaagtggtggtaagt |
35915557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 456 - 600
Target Start/End: Complemental strand, 35915505 - 35915361
Alignment:
| Q |
456 |
gtatttgatgtgttctattaatggagggttttatggttggtgttgtatattctaccatacgtttgtaaccgtcagcaccaaaattttaggagcaatattt |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915505 |
gtatttgatgtgttctattaatggagggttttatggttggtgttgtatattctaccatacgtttgtaaccgtcagcaccaaaattttaggagcaatattt |
35915406 |
T |
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| Q |
556 |
agtagtgctatctatgtatgtactatgttgtgttgtgcttgattg |
600 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35915405 |
agtagtgctatctatgtatgtactatgttgtgttgtgcttgattg |
35915361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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