View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6330_high_15 (Length: 206)
Name: NF6330_high_15
Description: NF6330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6330_high_15 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 26836365 - 26836211
Alignment:
| Q |
19 |
tgcatctcccatcatctctttcatggttgtgttgatactaatgatgaacgccttgagtcctttcatttattgtttcccgtcatggtaattggtaaatgat |
118 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26836365 |
tgcatctctcatcatctttttcatggttgtgttgataccaatgatgaacgccttgagtcctttcatttattgtttcccgtcatggtaattggtaaatgat |
26836266 |
T |
|
| Q |
119 |
gaaagcaccaatgtgaagataagaaattaaacaaaagcaaatgtggaaatctcaa |
173 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26836265 |
gaaagcaccaatgtaaagataagaaattatacaaaagcaaatgtggaaatctcaa |
26836211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University