View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6330_high_6 (Length: 425)
Name: NF6330_high_6
Description: NF6330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6330_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 49 - 293
Target Start/End: Original strand, 53685687 - 53685931
Alignment:
| Q |
49 |
tgaggagaattttccaaggagaataccatctgacccaaacagcacagtccattagcagagtatttttaacatagacgtcaaaacctcttctccataaaac |
148 |
Q |
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| T |
53685687 |
tgaggagaattttccaaggagaataccatctgacccaaacagcacagtccattagcagagtatttttaacatagacgtcaaaacctcttctccataaaac |
53685786 |
T |
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| Q |
149 |
ttcatattcaattttggtggcgagtcagtgtaatattcctttgcatgccgctcaaatttcgattttggagttatctttgttttaatcacattcctttgat |
248 |
Q |
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| T |
53685787 |
ttcatattcaattttggtggtgagtcagtgtaatattcctttgcatgccgctcaaatttcgattttggagttatctttgttttaatcacattcctttgat |
53685886 |
T |
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| Q |
249 |
tatgtagacatgttttagggtttctatagatagatttaggtttat |
293 |
Q |
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| T |
53685887 |
tatgtagacatgttttagggtttctatagatagatttaggtttat |
53685931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 311 - 425
Target Start/End: Original strand, 53685970 - 53686084
Alignment:
| Q |
311 |
tcacaaaatctaactatatcattgaattgttcttttcagatatttgtttgagagaaatcatggatgtcatgacagatttgggagtgtcctaaacatttct |
410 |
Q |
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| T |
53685970 |
tcacaaaatctaactatatcattgaattgttcttttcagatatttgtttgagagaaatcatggatgtcatgacagatttgggagtgtcctaaacatttct |
53686069 |
T |
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| Q |
411 |
cacagccaatcatac |
425 |
Q |
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| T |
53686070 |
cacagccaatcatac |
53686084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 108 - 275
Target Start/End: Original strand, 53695061 - 53695225
Alignment:
| Q |
108 |
gtatttttaacatagacgtcaaaacctcttctccataaaacttcatattcaattttggtggcgagtcagtgtaatattcctttgcatgccgctcaaattt |
207 |
Q |
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| T |
53695061 |
gtatttttaacatagaagtcaaaacctcttctccataaaacttcatctccaattttggtg---agtcattgtaacattcctttgcatgccacttaaattt |
53695157 |
T |
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| Q |
208 |
cgattttggagttatctttgttttaatcacattcctttgattatgtagacatgttttagggtttctat |
275 |
Q |
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| T |
53695158 |
cgtttttggagttatctttgctttaatcacattcctttaattatgtagacatgttttagggtttctat |
53695225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 53695279 - 53695373
Alignment:
| Q |
311 |
tcacaaaatctaactatatcattgaattgttcttttcagatatttgtttgag--agaaatcatggatgtcatgacagatttgggagtgtcctaaa |
403 |
Q |
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| T |
53695279 |
tcacaaaatctaactatattattgaattgttcttttcagatatttgttggagaaagaaatcatggatggcattacatgtttgggagtgtcctaaa |
53695373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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