View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6330_high_8 (Length: 278)

Name: NF6330_high_8
Description: NF6330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6330_high_8
NF6330_high_8
[»] chr4 (11 HSPs)
chr4 (1-260)||(23408355-23408614)
chr4 (1-72)||(23415712-23415783)
chr4 (1-71)||(23453376-23453446)
chr4 (5-71)||(26434232-26434298)
chr4 (5-71)||(26832943-26833009)
chr4 (1-71)||(23868936-23869006)
chr4 (1-71)||(23886031-23886101)
chr4 (1-71)||(24307427-24307497)
chr4 (5-71)||(26436012-26436078)
chr4 (1-71)||(23402278-23402348)
chr4 (1-71)||(34662045-34662115)
[»] chr1 (2 HSPs)
chr1 (4-60)||(33216652-33216708)
chr1 (7-71)||(45576413-45576477)
[»] chr7 (1 HSPs)
chr7 (1-69)||(47317486-47317554)


Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 23408614 - 23408355
Alignment:
Q  1 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtttattggtttcttag 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  23408614 tcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtttattggtttcttag 23408515  T
Q  101 tgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacttgaaaattgcttgtaga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  23408514 tgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacatgaaaattgcttgtaga 23408415  T
Q  201 attgggtttctctctgttttgaatgattgatctaggggtatcaaagactgaatacatttt 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23408414 attgggtttctctctgttttgaatgattgatctaggggtatcaaagacggaatacatttt 23408355  T

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Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 23415783 - 23415712
Alignment:
Q  1 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac 72  Q
    ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  23415783 tcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac 23415712  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 23453446 - 23453376
Alignment:
Q  1 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  23453446 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga 23453376  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 26434232 - 26434298
Alignment:
Q  5 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26434232 ggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26434298  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 26832943 - 26833009
Alignment:
Q  5 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26832943 ggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26833009  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23868936 - 23869006
Alignment:
Q  1 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    |||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || |||||||    
T  23868936 tcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 23869006  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23886031 - 23886101
Alignment:
Q  1 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    ||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || |||||||    
T  23886031 tcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 23886101  T

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Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 24307427 - 24307497
Alignment:
Q  1 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    ||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || |||||||    
T  24307427 tcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga 24307497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 71
Target Start/End: Original strand, 26436012 - 26436078
Alignment:
Q  5 ggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26436012 ggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga 26436078  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 23402278 - 23402348
Alignment:
Q  1 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    ||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || |||||||    
T  23402278 tcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga 23402348  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 34662115 - 34662045
Alignment:
Q  1 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    |||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| |||||||    
T  34662115 tcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga 34662045  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 33216652 - 33216708
Alignment:
Q  4 tggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttac 60  Q
    ||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||    
T  33216652 tggtgaattggccaaacatgctgtttctgagggtaccaaggctgtgaccaagtttac 33216708  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 45576413 - 45576477
Alignment:
Q  7 tgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 71  Q
    ||||||||| ||||||| ||||||||| || ||||| |||||||| || || |||||||||||||    
T  45576413 tgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga 45576477  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 47317486 - 47317554
Alignment:
Q  1 tcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctta 69  Q
    |||||||||||||||||| |||| ||||||||| || ||||| |||||||| |||||||| || |||||    
T  47317486 tcctggtgaattggccaaacatgttgtttctgagggtaccaaagctgtgaccaagtttactagttctta 47317554  T

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