View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6330_low_3 (Length: 500)
Name: NF6330_low_3
Description: NF6330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6330_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 222 - 486
Target Start/End: Original strand, 38873360 - 38873624
Alignment:
| Q |
222 |
tgatctctctttttcttcttagcttcgccaacaacctcattcgtaatcgagaattgttcatcatttacttatatttgttttatctttcattagtactacc |
321 |
Q |
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| T |
38873360 |
tgatctctctttttcttcttagcttcgccaacaacctcgttcgcaatcaagaattgttcatcatttacttatatttgttttatctttcattagtactacc |
38873459 |
T |
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| Q |
322 |
gtttaaaccgagtaacgttccccttttataactccatttattgcagctgatttaattgttgaatcaatccagttttgttttagaaaaataaaatagaaaa |
421 |
Q |
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| T |
38873460 |
gtttaaaccgagtaacgttccccttttataattccatttattgcagctgatttaattgttgaatcaatccagttttgttttagaaaaataaaatagaaaa |
38873559 |
T |
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| Q |
422 |
ctttctcattatcccttatcatagcatgttggtagtctctgtctcgctttgtgacaaacaatttg |
486 |
Q |
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| T |
38873560 |
ctttctcattatcccttatcatagcatgttggtagtctctgtctcgctttgtgacaaacaatttg |
38873624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 63 - 169
Target Start/End: Original strand, 38873199 - 38873307
Alignment:
| Q |
63 |
taaccaactctctttttcttcttctcagcttcgtgaacgatggagtcaagaattgttcatcatttttacttattatt---atcattcttataggataatc |
159 |
Q |
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| T |
38873199 |
taaccaactctctttttcttcttctcagcttcgtcaatgatg-agtcaagaattgctcatcatttttacttattattatcatcattcttataggataatc |
38873297 |
T |
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| Q |
160 |
aagataagac |
169 |
Q |
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| T |
38873298 |
aagataagac |
38873307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 58
Target Start/End: Original strand, 38873124 - 38873172
Alignment:
| Q |
9 |
tcatcattctcatcatagaatcaagataaggtccaattaacaaaatcatg |
58 |
Q |
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| T |
38873124 |
tcatcattctcatcgtagaatcaagataa-atccaatcaacaaaatcatg |
38873172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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