View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6330_low_4 (Length: 444)
Name: NF6330_low_4
Description: NF6330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6330_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 10 - 429
Target Start/End: Complemental strand, 1616598 - 1616180
Alignment:
| Q |
10 |
aagaatattatttgacaaaaatgttgacaaacgcttgttttacgttactcatattagnnnnnnnngagaggtacttatacttaatttgttgtattttata |
109 |
Q |
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| T |
1616598 |
aagaatattatttgacaaaaatgttgacaaacgcttgttttacgttactcatattagttttttt-gagaggtacttatactta-----ttgtattttata |
1616505 |
T |
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| Q |
110 |
agtattttgaggccaaatcttaaaaat--atgtattaagttccctnnnnnnnnnnnt---tatgcatcaagtaaagtttggtgcattaattcttatcaat |
204 |
Q |
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| T |
1616504 |
agtattttgaggccaaatcttaaaaatttatgtattaagttccctaaaaaataaaataattatgcatcaagtaaagtttggtgcattaattcttatcaat |
1616405 |
T |
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| Q |
205 |
caaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttttaattaagcattaagtaattcaataaaaacgt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1616404 |
caaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttttaattaagcattaagtaattcaataaaaacgt |
1616305 |
T |
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| Q |
305 |
atcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcataaatactaaatatgagggcatttattcagaaacagta |
404 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1616304 |
atcattcatcataaataatcaaatcaatgagtcctttagggactttccgataaataaattcataaatactaaatatgagggcatttattcaaaaacagta |
1616205 |
T |
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| Q |
405 |
taaaaactgatctttataaacaaat |
429 |
Q |
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| T |
1616204 |
taaaaactgatctttataaacaaat |
1616180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 270 - 372
Target Start/End: Original strand, 40050596 - 40050698
Alignment:
| Q |
270 |
ttttaattaagcattaagtaattcaataaaaacgtatcattcatcataaataatcaaatcaacgagtcctttagggactttccgataaataaattcataa |
369 |
Q |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| || ||||||| |||||| |||||||||||||||||| |
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| T |
40050596 |
ttttaattaagcattaattaattcaataaaaacgtatcattcttcataaataatcaaatcaatgaatcctttaacgacttttcgataaataaattcataa |
40050695 |
T |
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| Q |
370 |
ata |
372 |
Q |
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||| |
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| T |
40050696 |
ata |
40050698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 40050472 - 40050572
Alignment:
| Q |
173 |
aagtaaagtttggtgcattaattcttatcaatcaaatcccttgtataaggggagatttctaaaattcggcacttctttctttttctgaaaaggaattttt |
272 |
Q |
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| T |
40050472 |
aagtaaattttgatgcattgattcttctcaatcaaatcccttgtataacgggagatttctaaaattcggtttttatttctttttctgaaaaggaattttt |
40050571 |
T |
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| Q |
273 |
t |
273 |
Q |
| |
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| |
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| T |
40050572 |
t |
40050572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 95 - 147
Target Start/End: Original strand, 40050421 - 40050475
Alignment:
| Q |
95 |
ttgttgtattttataagtattttgaggccaaatcttaaaaa--tatgtattaagt |
147 |
Q |
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|||||||||||||||||||||||||| |||||||||||||| |||||||||||| |
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| T |
40050421 |
ttgttgtattttataagtattttgagaccaaatcttaaaaatctatgtattaagt |
40050475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 40050335 - 40050392
Alignment:
| Q |
10 |
aagaatattatttgacaaaaatgttgacaaacgcttg---ttttacgttactcatatt |
64 |
Q |
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|||||| |||||||||||||||||||||||| ||||| |||||||||| ||||||| |
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| T |
40050335 |
aagaattttatttgacaaaaatgttgacaaaggcttgtacttttacgttattcatatt |
40050392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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