View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6330_low_5 (Length: 437)
Name: NF6330_low_5
Description: NF6330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6330_low_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 11 - 437
Target Start/End: Original strand, 38872704 - 38873130
Alignment:
| Q |
11 |
cacagaccatctcatataaccaagatgactcgacattaacaccaacaagtaaatttttgtgaaaatttaccttcagccaaaaagcaactcaaaaagtaaa |
110 |
Q |
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| T |
38872704 |
cacagaccatctcatataaccaagatgactcgacattaacaccaacaagtaaatttttgtgaaaatttaccttcagccagaaagcaactcaaaaagtaaa |
38872803 |
T |
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| Q |
111 |
aagtgtgacctttttggtatggttgcaccaactctttttaccaatgatcaacttatcatcagaaaactaaaggtgagtgtctctcaaaggtttgtcggtg |
210 |
Q |
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| T |
38872804 |
aagtgtgacctttttggtatggttgcaccaactctttttacccatgatcaacttatcatcagaaaactaaaggtgagtgtctctcaaaggtttgtcggtg |
38872903 |
T |
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| Q |
211 |
tccacttgaaactcgcaaaacttttccaacatgatctccttcaaaactcaagagttgaacttttcaccttgtataagaaatagaaaacgggacagaggtt |
310 |
Q |
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| T |
38872904 |
tccacttgaaactcgcaaaacttttccaacatgatctccttcaaaactaaagagttgaacttttcagcttgtataagaaatagaaaacgggaaagaggtt |
38873003 |
T |
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| Q |
311 |
gtcgttgtcttgacccacaaactatcaagaacttgtcgactgggcttccatatacacaaacatatggtgtgattgtacttaaacattcggacattcaata |
410 |
Q |
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| T |
38873004 |
gtcgttgtcttgacccacaaactatcaagaacttgtcgactgggcttccatatacacaaacatatggtgtgattgtacttaaacattcggacattcaata |
38873103 |
T |
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| Q |
411 |
cctccatttagatggaaaattcatcat |
437 |
Q |
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| T |
38873104 |
cctccatttagatggaaaattcatcat |
38873130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 437
Target Start/End: Original strand, 16553436 - 16553495
Alignment:
| Q |
378 |
tgtgattgtacttaaacattcggacattcaatacctccatttagatggaaaattcatcat |
437 |
Q |
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| T |
16553436 |
tgtggttgtacttaactattcatacatccaacacctccatttagatggaaaattcatcat |
16553495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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