View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6330_low_7 (Length: 412)
Name: NF6330_low_7
Description: NF6330
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6330_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 8 - 398
Target Start/End: Original strand, 12776896 - 12777283
Alignment:
| Q |
8 |
tgaaatgaattaagtttatcctatgtgtaacagaaatacaaacaatgctttaaaattgtagtaggtagtagttagttactttaggcaatctatctaaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12776896 |
tgaaatgaattaagtttatcctatgtgtaacataaatacaaacaatgctataaaattgtagt---tagtagttagttactttaggcaatctatctaaatt |
12776992 |
T |
|
| Q |
108 |
aactattaatctttatttgtgatatttatttacgaacactcattaacatttcccttatttatttattaatgcagaagagacagtttcatcacacacaggg |
207 |
Q |
| |
|
|||| |||||||| |||||||||||||||||| | |||||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
12776993 |
aactgttaatcttaatttgtgatatttatttagggacactcgttaacattttccttatttatttatcaatgcagaagagacagtttcatcacacacaggg |
12777092 |
T |
|
| Q |
208 |
ctttttgtgatgcacttgctcaagaaagttcaagacaaccacatccaaacctaatcaccaacacttccattaataactcccaactatttcgaaatattag |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12777093 |
ctttttgtgatgcacttgctcaagaaagttcaagacaaccacatccaaacctaatcaccaacacttccattaataactcccaactatttcgaaatattag |
12777192 |
T |
|
| Q |
308 |
taacaacaacaataacatgtccttagccttgtctcaaattcctcaacaacatatctcttcctttcatggccaaaacgacaacaatcaaact |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12777193 |
taacaacaacaataacatgtccttagccttgtctcaaattcctcaacaacatatctcttccattcatggccaaaacgacaacaatcaaact |
12777283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University