View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6331_high_16 (Length: 255)
Name: NF6331_high_16
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_high_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 254
Target Start/End: Complemental strand, 26875538 - 26875297
Alignment:
| Q |
13 |
cataggaggtatcatcgtattatcattaacacgtgaagacacatgacaagagaaaacagagaaaagaggcacacaatttctgaactaaaggtacatttcg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26875538 |
cataggaggtatcatcgtattatcattaacacgtgaacacacatgacaagagaaaacagagaaaagaggcacacaatttctgaactaaaggtacatttcg |
26875439 |
T |
|
| Q |
113 |
ctggaaatacaattaacctatttaatttccgtatcatttttaccagattttaggcaaatccttgtttttctaaacattgccttgagaacaaggtcgtttg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26875438 |
ctggaaatacaattaacctatttaatttccgtatcatttttaccagattttaggcaaatccttgtttttctaaacattgccttgagaacaaggtcgtttg |
26875339 |
T |
|
| Q |
213 |
tggttctttggcatagatcaaatcaaaataatactcatgaat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26875338 |
tggttctttggcatagatcaaatcaaaataatactcatgaat |
26875297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University