View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6331_high_2 (Length: 645)
Name: NF6331_high_2
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_high_2 |
 | |
|
| [»] scaffold0043 (5 HSPs) |
| | |
|
| [»] scaffold1142 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 460
Target Start/End: Original strand, 19484383 - 19484842
Alignment:
| Q |
1 |
caagatcaacatcttcaaaatttgactttacactctgcataaaatgaaaaatagatatttaaatgggtagcataatttaattgctatgttgaaaaagagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19484383 |
caagatcaacatcttcaaaatttgactttacactctgcataaaatgaaaaatagatatttaaatgggtagcataatttaattgctatgttgaaaaagagt |
19484482 |
T |
|
| Q |
101 |
caaaggaataaaaaggggtatgcctgttgtttaagaggtaattgaatatcttgatcattttgtgttcctgacatagaatcctggcacgcgttgagtttat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19484483 |
caaaggaataaaaaggggtatgcctgttgtttaagaggtaattgaatatcttgatcattttgtgttcctgacatagaatcctggcacgcgttgagtttat |
19484582 |
T |
|
| Q |
201 |
acctttgatcattttgtgttctttgatcctgaaaatgtaaataagttacagcatgtatcttaaaagcgtttaaagtataaattaattcataatatatgtt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19484583 |
acctttgatcattttgtgttctttgatcctgaaaatgtaaataagttacagcatgtatcttaaaagcgtttaaagtataaattaattcataatatatgtt |
19484682 |
T |
|
| Q |
301 |
tcttagttagtttatagtttgttattagtttgtttacacatatttcaacaactcatttggattcctaagcatgtctcccatgtaaaagaactcatttgta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19484683 |
tcttagttagtttatagtttgttattagtttgtttacacatatttcaacaactcatttggattcctaagcatgtctcccatgtaaaagaactcatttgta |
19484782 |
T |
|
| Q |
401 |
ataattaatgttagtatctaagtatcacttacttcctccaactaagcagcttaagaaaac |
460 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19484783 |
ataattaatgttagtatctaagtatcacttacttcctccaactaagcagcttaagaaaac |
19484842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 27390078 - 27390256
Alignment:
| Q |
1 |
caagatcaacatcttcaaaatttgactttacactctgcataaaatgaaaaatagatatttaaatgggtagcataatttaattgctatgttgaaaaagagt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||||||||||||||||| || |||||| |||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
27390078 |
caagatcaacatcttcaaaacttgactggatactctgcataaaatgaaaaa--gaaatttaagtgggtagcatgattcaattcctatgttgaaaaagagt |
27390175 |
T |
|
| Q |
101 |
caaaggaataaaaaggggtatgcctgttgtttaag---aggtaattgaatatcttgatcattttgtgttcctgacatagaa |
178 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
27390176 |
caaaggaataaaaaggggtatgccttttgtttaggagcaggtaattgaatatcttgatcattttttgttcccgacgtagaa |
27390256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 221 - 423
Target Start/End: Original strand, 1366585 - 1366775
Alignment:
| Q |
221 |
ctttgatcctgaaaatgtaaataagttacagcatgtatcttaaaagcgtttaaagtataaattaattcataatatatgtttcttagttagtttatagttt |
320 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||| |
|
|
| T |
1366585 |
ctttgatcctgaaaatgtaaataagttgaagcatatatcttaaaagtgtttaaagtataaattaattccta--atatgtttcttagttagtttatagttt |
1366682 |
T |
|
| Q |
321 |
gttattagtttgtttacacatatttcaacaactcatttggattcctaagcatgtctcccatgta-aaagaactcatttgtaata-attaatgttagtatc |
418 |
Q |
| |
|
| |||||||| ||||||||||||||||||| || |||||| ||||||||||| | | ||||||||||||||| ||||||||| ||| |
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|
| T |
1366683 |
g------------ttacacatctttcaacaactcatttggaggccgaagcatatctcccatgtacatataactcatttgtaatattttaatgttaatatg |
1366770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 218 - 380
Target Start/End: Original strand, 27390266 - 27390428
Alignment:
| Q |
218 |
gttctttgatcctgaaaatgtaaataagttacagcatgtatcttaaaagcgtttaaa---gtataaattaattcataatatatgtttcttagttagttta |
314 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||| ||||||||||| |||||| |||| ||||||||||| |||| ||||| ||||||||| |
|
|
| T |
27390266 |
gttctttgatcctgaaaatgtaaagaagttgcagcatttatcttaaaagtgtttaatactgtatcctttaattcataaaatat--ttctttgttagttta |
27390363 |
T |
|
| Q |
315 |
tagtttgttattagtttgtttacacatatttcaacaactcatttggattcctaagcatgtctccca |
380 |
Q |
| |
|
||||||| ||||||||| || |||||| |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27390364 |
tagtttggtattagtttctt-acacatctttcaacaactcatttggatgcctaagcatgtctccca |
27390428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 27378518 - 27378340
Alignment:
| Q |
1 |
caagatcaacatcttcaaaatttgactttacactctgcataaaatgaaaaatagatatttaaatgggtagcataatttaattgctatgttgaaaaagagt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| | |||| |||||| ||||| ||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
27378518 |
caagatcaacatcttcaaaacttgacttgatcctctaaataaaaggaaaat--gatatttaagtgggtagcataattcaattgctatgttgaaaaagagt |
27378421 |
T |
|
| Q |
101 |
caaaggaataaaaaggggtatgcctgttgtttaag---aggtaattgaatatcttgatcattttgtgttcctgacatagaa |
178 |
Q |
| |
|
|||| |||||||||||| |||||| ||||||||| | ||||||||||||||| ||||| | || ||||||| ||||| |
|
|
| T |
27378420 |
caaaagaataaaaagggtaatgccttttgtttaagggaaactaattgaatatcttggtcattctttgatcctgacgtagaa |
27378340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 561 - 628
Target Start/End: Original strand, 18022996 - 18023063
Alignment:
| Q |
561 |
attctccatccgcaacccaaacttttactcttcaataggtgaattaactcattgtggatgctcttgct |
628 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18022996 |
attctccatccgcaacccaaacttttactcttcaataggtgaattaactcattgtggatgctcttgct |
18023063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 513 - 565
Target Start/End: Original strand, 19484895 - 19484947
Alignment:
| Q |
513 |
gtggagcagacaaaataatgaagagagatattcttttaaaaagacatcattct |
565 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19484895 |
gtggagcagacaaaataatgaagagagatattcttttaaaaagacatcattct |
19484947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 27349176 - 27349002
Alignment:
| Q |
5 |
atcaacatcttcaaaatttgactttacactctgcataaaatgaaaaatagatatttaaatgggtagcataatttaattgctatgttgaaaaagagtcaaa |
104 |
Q |
| |
|
||||| |||||||| | || || | |||||||||| ||||||||||| | ||||||| ||||||| |||||| |||| || |||||||||||||||| |
|
|
| T |
27349176 |
atcaatatcttcaatacttaacctgacactctgcacaaaatgaaaaaca--tatttaagtgggtagtataattaaattcctttgttgaaaaagagtcatg |
27349079 |
T |
|
| Q |
105 |
ggaataaaaaggggtatgcctgttgtttaag---aggtaattgaatatcttgatcattttgtgttcctgacatagaa |
178 |
Q |
| |
|
|| ||||||||| |||||| ||||||||| | ||||||||||||||| ||||| | |||||||||| ||||| |
|
|
| T |
27349078 |
agagtaaaaagggtaatgccttttgtttaagatcaactaattgaatatcttggtcattctttgttcctgacgtagaa |
27349002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 19474753 - 19474709
Alignment:
| Q |
221 |
ctttgatcctgaaaatgtaaataagttacagcatgtatcttaaaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
19474753 |
ctttgatcctgaaaatgtaaataagttgaagcatatatcttaaaa |
19474709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 220 - 420
Target Start/End: Complemental strand, 30123 - 29924
Alignment:
| Q |
220 |
tctttgatcctgaaaatgtaaataagttacagcatgtatcttaaaagcgtttaaagtataaattaattcataatatatgtttcttagttagtttatagtt |
319 |
Q |
| |
|
|||||| |||||||||| ||||||| || || || ||||||||| | ||||||||||||||||||||| ||| ||||||||||||||||| ||||| || |
|
|
| T |
30123 |
tctttgttcctgaaaatataaataaattgaagaatatatcttaaatgtgtttaaagtataaattaattc-taa-atatgtttcttagttagcttataatt |
30026 |
T |
|
| Q |
320 |
tgttattagtttgtttacacatatttcaacaactcatttggattcctaagcatgtctcccatgta-aaagaactcatttgtaata-attaatgttagtat |
417 |
Q |
| |
|
| ||||||||||||| |||||| |||||||||||||||||||| ||||||||| ||||||||||| | | ||||||||||||||| |||||||||| || |
|
|
| T |
30025 |
tattattagtttgtt-acacatctttcaacaactcatttggatgcctaagcatatctcccatgtacacataactcatttgtaatattttaatgttaggat |
29927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 220 - 420
Target Start/End: Complemental strand, 44981 - 44782
Alignment:
| Q |
220 |
tctttgatcctgaaaatgtaaataagttacagcatgtatcttaaaagcgtttaaagtataaattaattcataatatatgtttcttagttagtttatagtt |
319 |
Q |
| |
|
|||||| |||||||||| ||||||| || || || ||||||||| | ||||||||||||||||||||| ||| ||||||||||||||||| ||||| || |
|
|
| T |
44981 |
tctttgttcctgaaaatttaaataaattgaagaatatatcttaaatgtgtttaaagtataaattaattc-taa-atatgtttcttagttagcttataatt |
44884 |
T |
|
| Q |
320 |
tgttattagtttgtttacacatatttcaacaactcatttggattcctaagcatgtctcccatgta-aaagaactcatttgtaata-attaatgttagtat |
417 |
Q |
| |
|
| ||||||||||||| |||||| |||||||||||||||||||| ||||||||| |||| |||||| | | ||||||||||||||| |||||||||| || |
|
|
| T |
44883 |
tattattagtttgtt-acacatctttcaacaactcatttggatgcctaagcatatctctcatgtacacataactcatttgtaatattttaatgttaggat |
44785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 178
Target Start/End: Original strand, 52909 - 53087
Alignment:
| Q |
5 |
atcaacatcttcaaaatttgactttacactctgcataaaatgaaaaatagatat--ttaaatgggtagcataatttaattgctatgttgaaaaagagtca |
102 |
Q |
| |
|
||||| |||||||| | || || | |||||||||| ||||||| ||| | || | |||| ||||||| |||||| |||| || |||||||||||||||| |
|
|
| T |
52909 |
atcaatatcttcaatacttaacctgacactctgcacaaaatgataaacatatttaattaagtgggtagtataattaaattcctttgttgaaaaagagtca |
53008 |
T |
|
| Q |
103 |
aaggaataaaaaggggtatgcctgttgtttaag---aggtaattgaatatcttgatcattttgtgttcctgacatagaa |
178 |
Q |
| |
|
|| ||||||||| |||||| ||||||||| | ||||||||||||||| ||||| | |||||||||| ||||| |
|
|
| T |
53009 |
tgagagtaaaaagggtaatgccttttgtttaagatcaactaattgaatatcttggtcattctttgttcctgacgtagaa |
53087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 30222 - 30173
Alignment:
| Q |
1 |
caagatcaacatcttcaaaatttgactttacactctgcataaaatgaaaa |
50 |
Q |
| |
|
|||||||||||||||||| | ||||||| | ||||||||||||||||||| |
|
|
| T |
30222 |
caagatcaacatcttcaatacttgacttgatactctgcataaaatgaaaa |
30173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 45080 - 45031
Alignment:
| Q |
1 |
caagatcaacatcttcaaaatttgactttacactctgcataaaatgaaaa |
50 |
Q |
| |
|
|||||||||||||||||| | ||||||| | ||||||||||||||||||| |
|
|
| T |
45080 |
caagatcaacatcttcaatacttgacttgatactctgcataaaatgaaaa |
45031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1142 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: scaffold1142
Description:
Target: scaffold1142; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 414 - 236
Alignment:
| Q |
1 |
caagatcaacatcttcaaaatttgactttacactctgcataaaatgaaaaatagatatttaaatgggtagcataatttaattgctatgttgaaaaagagt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||| | ||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
414 |
caagatcaacatcttcaaaacttgacttgatcatctgcataaaatggaaat--gatatttaagtgggtagcataattcaattgctatgttgaaaaagagt |
317 |
T |
|
| Q |
101 |
caaaggaataaaaaggggtatgcctgttgtttaag---aggtaattgaatatcttgatcattttgtgttcctgacatagaa |
178 |
Q |
| |
|
|| | ||||||||||| |||||| ||||||||| | ||||||||||||||| ||||| | |||||||||| ||||| |
|
|
| T |
316 |
cagaataataaaaagggcaatgccttttgtttaagatcaactaattgaatatcttggtcattctttgttcctgacgtagaa |
236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 5 - 178
Target Start/End: Complemental strand, 22393487 - 22393309
Alignment:
| Q |
5 |
atcaacatcttcaaaatttgactttacactctgcataaaatgaaaaatagatat--ttaaatgggtagcataatttaattgctatgttgaaaaagagtca |
102 |
Q |
| |
|
||||| |||||||| | || || | |||||||||| ||||||| ||| | || | |||| ||||||| |||||| |||| || |||||||||||||||| |
|
|
| T |
22393487 |
atcaatatcttcaatacttaacctgacactctgcacaaaatgataaacatatttaattaagtgggtagtataattaaattcctttgttgaaaaagagtca |
22393388 |
T |
|
| Q |
103 |
aaggaataaaaaggggtatgcctgttgtttaag---aggtaattgaatatcttgatcattttgtgttcctgacatagaa |
178 |
Q |
| |
|
|| ||||||||| |||||| ||||||||| | ||||||||||||||| ||||| | |||||||||| ||||| |
|
|
| T |
22393387 |
tgagagtaaaaagggtaatgccttttgtttaagatcaactaattgaatatcttggtcattctttgttcctgacgtagaa |
22393309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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