View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_high_23 (Length: 239)
Name: NF6331_high_23
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_high_23 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 4292633 - 4292433
Alignment:
| Q |
18 |
agatcacacagagtatagagtaggattacccaatcaatccggtccaattcaatttgttgtttatctgttcgttttgaattttatctcaaaatatacaaat |
117 |
Q |
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| T |
4292633 |
agatcacacagagtatagagtaggattacccaatcaatccggtccaattcaatttgttgtttatctgttcgttttgaattttatctcaaaatatacaaat |
4292534 |
T |
|
| Q |
118 |
ccaactcaactcaatctgtatatgtttgtttgatcgaccaggacatcaagtttatttaaaatcaaaccaaaccgattcgcaaacatctctaattattttc |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4292533 |
ccaactcaactcaatctgtatatg----tttgatcgaccaggacatcaagtttatttaaaatcaaaccaaaccgattcgcaaacatccctaattattttc |
4292438 |
T |
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| Q |
218 |
gatcc |
222 |
Q |
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||||| |
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| T |
4292437 |
gatcc |
4292433 |
T |
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