View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_high_28 (Length: 216)
Name: NF6331_high_28
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 18099974 - 18099793
Alignment:
| Q |
18 |
atgaagcagccaaggttgttaagttatgtcaaaagcctctttaacgaggccattttgatctaaatcttttattaagtagagggacgattaaagggtgact |
117 |
Q |
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| T |
18099974 |
atgaagcagccaaggttgttaagttatgtcaaaagcctctttaacaaggccattttgatctaaatcttttattaagtagagggacgattaaagggtgact |
18099875 |
T |
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| Q |
118 |
ttcatgatcctccaaaagtaaagactacgtacccgttcgttcggcgttcttggtcatctaacattgcctttaggtactatct |
199 |
Q |
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| T |
18099874 |
ttcatgatcctccaaaagtaaagactacgtacccgttcgttcggcgttcttggtcatctaacattgcctttaggtactatct |
18099793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 18 - 92
Target Start/End: Complemental strand, 18115734 - 18115660
Alignment:
| Q |
18 |
atgaagcagccaaggttgttaagttatgtcaaaagcctctttaacgaggccattttgatctaaatcttttattaa |
92 |
Q |
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|||||||| |||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||| |
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| T |
18115734 |
atgaagcaaccaaggttgttaagttatgtcacaagcctcttcaatgaggccattttgatctaaatcttttattaa |
18115660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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