View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6331_high_30 (Length: 207)
Name: NF6331_high_30
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_high_30 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 7293472 - 7293673
Alignment:
| Q |
6 |
agtagcaaaggctcatttcagttttgatttcatcaagtagttgatgtttaaagctatcaagtgacttaaaaatgttgttgaagtcattccttgaaagatc |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7293472 |
agtagcaagggctcatttcagttttgatttcatcaagtagtttatgtttaaagctatcaagtgacttaaaaatgttgttgaagtcattccctgaaagatc |
7293571 |
T |
|
| Q |
106 |
gttaaaaaatatcttgtattcgggagatgcatatttcaattgttggcaaagcttctccacaaccatgatgatttctgacaccacagacaaagtgttttgt |
205 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7293572 |
gttaaaaaagatcttgtattcgggagatgcatatttcaattgttggcaaagcttctccacaaccatgatgatttctgacaccacagacaaagtgttttgt |
7293671 |
T |
|
| Q |
206 |
cc |
207 |
Q |
| |
|
|| |
|
|
| T |
7293672 |
cc |
7293673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 207
Target Start/End: Original strand, 7297957 - 7298147
Alignment:
| Q |
17 |
ctcatttcagttttgatttcatcaagtagttgatgtttaaagctatcaagtgacttaaaaatgttgttgaagtcattccttgaaagatcgttaaaaaata |
116 |
Q |
| |
|
||||||| ||||||||||||||| | |||| | ||||||| | |||||||||||||| ||||||||||||||||| | |||| ||| |||||||||| |
|
|
| T |
7297957 |
ctcattttagttttgatttcatcttgcagtttctctttaaagttgtcaagtgacttaaatatgttgttgaagtcatttccagaaacatcattaaaaaata |
7298056 |
T |
|
| Q |
117 |
tcttgtattcgggagatgcatatttcaattgttggcaaagcttctccacaaccatgatgatttctgacaccacagacaaagtgttttgtcc |
207 |
Q |
| |
|
||||||| |||||||||| || ||||||||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||| |||| |
|
|
| T |
7298057 |
tcttgtactcgggagatgaatggttcaattgttggcaaagcttctccacaaccatgataatatctgataccacaaacaaagtgtttggtcc |
7298147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University