View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_low_10 (Length: 376)
Name: NF6331_low_10
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 181 - 358
Target Start/End: Complemental strand, 28183012 - 28182835
Alignment:
| Q |
181 |
gagcatatataatagttcacacatagttaactccacagactgccctgcaccaaatagtaatagataaataatagtgacactgacagtagtaaataccagt |
280 |
Q |
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| T |
28183012 |
gagcatatataatagttcacacatggttaactccacagactgccctgcaccaaatagtaatagataaataatagtgacactgacagtagtaaatacaagt |
28182913 |
T |
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| Q |
281 |
atccaaaaatgcagcaatctgtccagaaacaattgtaattgaagcatgctgannnnnnnnaacataggagagaacaaa |
358 |
Q |
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| T |
28182912 |
atccaaaaatgcagcaatctgtccagaaacaattgtaattgaagcatgctgattttttttaacataggagagaacaaa |
28182835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 11 - 65
Target Start/End: Complemental strand, 28183160 - 28183106
Alignment:
| Q |
11 |
cacagagagacagtattagaaaatataagtgtgtgtgctagtttgagatacattc |
65 |
Q |
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| T |
28183160 |
cacagagagacagtattagaaaatataagtgtgtgtgctagtttgagatacattc |
28183106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 28183060 - 28183020
Alignment:
| Q |
117 |
taggattctctgcatttaccttttcctgaacaatataaata |
157 |
Q |
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| T |
28183060 |
taggattctctgcatttaccttttcctgaacaatataaata |
28183020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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