View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6331_low_11 (Length: 368)

Name: NF6331_low_11
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6331_low_11
NF6331_low_11
[»] chr5 (3 HSPs)
chr5 (17-361)||(36735043-36735387)
chr5 (65-210)||(36738118-36738263)
chr5 (228-300)||(36738019-36738088)
[»] chr3 (11 HSPs)
chr3 (17-152)||(22795675-22795810)
chr3 (18-152)||(22790400-22790534)
chr3 (18-152)||(22822871-22823005)
chr3 (18-152)||(22824640-22824774)
chr3 (17-137)||(22784249-22784369)
chr3 (17-137)||(22788613-22788733)
chr3 (17-152)||(22786027-22786162)
chr3 (18-152)||(22826408-22826542)
chr3 (97-152)||(22793802-22793857)
chr3 (66-168)||(22784083-22784187)
chr3 (66-168)||(22788447-22788551)
[»] chr8 (3 HSPs)
chr8 (17-137)||(5613158-5613278)
chr8 (17-152)||(5611365-5611500)
chr8 (66-168)||(5613340-5613444)
[»] chr6 (1 HSPs)
chr6 (103-151)||(4038759-4038807)


Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 17 - 361
Target Start/End: Complemental strand, 36735387 - 36735043
Alignment:
Q  17 aggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735387 aggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttt 36735288  T
Q  117 tgatacagctgaacaagcagctcaagcttatgatgccacagccacttcataccgtgggaacaatgccataacaaacttcccaataccttacaatgccgcg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735287 tgatacagctgaacaagcagctcaagcttatgatgccacagccacttcataccgtgggaacaatgccataacaaacttcccaataccttacaatgccgcg 36735188  T
Q  217 aacagtgttgttgaagcatctagggttgctgttggttcttcttcaaccgttgtttctagggttcctgttgctacttctatacctgctattgtaggtgaag 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36735187 aacagtgttgttgaagcatctagggttgctgttggttcttcttcaaccgttgtttctagggttcctgttgctacttctatacctgctattgtaggtgaag 36735088  T
Q  317 atcgtcacaatgattttgatgcttcttctgttgttgttgatgatg 361  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||    
T  36735087 atcgtcacaatgattttgatgcttcttctgttgatgtggatgatg 36735043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 36738263 - 36738118
Alignment:
Q  65 gtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccacttc 164  Q
    ||||| |||||||| |||| |||| ||||| || || ||||||||||||||   |||| || || |||||||| | |||||| |||||  |||| | |||    
T  36738263 gtgcagaaattcgaaacccctggaaaaaacaatgtgaatggttaggcacttacaatactgcagagcaagcagcccgagcttacgatgcagcagctatttc 36738164  T
Q  165 ataccgtgggaacaatgccataacaaacttcccaataccttacaat 210  Q
    || |||||||  ||||||||| ||||||||||||||||||||||||    
T  36738163 attccgtggggtcaatgccattacaaacttcccaataccttacaat 36738118  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 36738088 - 36738019
Alignment:
Q  228 tgaagcatctagggttgctgttggttcttcttcaaccgttgtttctagggttcctgttgctacttctatacct 300  Q
    ||||||||||||||||| ||||||||   |||||||  ||||||||||||||| || ||||||| ||| ||||    
T  36738088 tgaagcatctagggttgttgttggtt---cttcaacaattgtttctagggttcttgctgctactcctagacct 36738019  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 22795810 - 22795675
Alignment:
Q  17 aggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttt 116  Q
    |||||||||||||| |  ||||||||||||||||||||||  |  |  ||||  ||||| ||||||||||||||||| | |||||||| ||||| ||||     
T  22795810 aggaaattcgttactgaggcgtgaggaagacaaaatatggcagatacggtgcggaaatttgagacccatggagaaaagcttatgtatgattaggaactta 22795711  T
Q  117 tgatacagctgaacaagcagctcaagcttatgatgc 152  Q
    ||||| |||||| |||||||| || ||||| |||||    
T  22795710 tgatagagctgatcaagcagcacaggcttacgatgc 22795675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 22790534 - 22790400
Alignment:
Q  18 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 117  Q
    |||||||||||||||  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22790534 ggaaattcgttaccgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22790435  T
Q  118 gatacagctgaacaagcagctcaagcttatgatgc 152  Q
    |||| ||||||||||||||| | |||||| |||||    
T  22790434 gatagagctgaacaagcagcacgagcttacgatgc 22790400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 22823005 - 22822871
Alignment:
Q  18 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 117  Q
    |||||||||||||||  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22823005 ggaaattcgttaccgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22822906  T
Q  118 gatacagctgaacaagcagctcaagcttatgatgc 152  Q
    |||| ||||||||||||||| | |||||| |||||    
T  22822905 gatagagctgaacaagcagcacgagcttacgatgc 22822871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 22824774 - 22824640
Alignment:
Q  18 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 117  Q
    |||||||||||||||  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22824774 ggaaattcgttaccgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22824675  T
Q  118 gatacagctgaacaagcagctcaagcttatgatgc 152  Q
    |||| ||||||||||||||| | |||||| |||||    
T  22824674 gatagagctgaacaagcagcacgagcttacgatgc 22824640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 22784369 - 22784249
Alignment:
Q  17 aggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttt 116  Q
    ||||||||||||||||  || |||||||||||||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| ||||| ||||     
T  22784369 aggaaattcgttaccgaggcttgaggaagacaaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattaggaactta 22784270  T
Q  117 tgatacagctgaacaagcagc 137  Q
    ||||| |||||||||||||||    
T  22784269 tgataaagctgaacaagcagc 22784249  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 22788733 - 22788613
Alignment:
Q  17 aggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttt 116  Q
    ||||||||||||||||  || |||||||||||||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| ||||| ||||     
T  22788733 aggaaattcgttaccgaggcttgaggaagacaaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattaggaactta 22788634  T
Q  117 tgatacagctgaacaagcagc 137  Q
    ||||| |||||||||||||||    
T  22788633 tgataaagctgaacaagcagc 22788613  T

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Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 22786162 - 22786027
Alignment:
Q  17 aggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttt 116  Q
    ||||||||||||||||  ||||||||||||| ||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| ||||| ||||     
T  22786162 aggaaattcgttaccgaggcgtgaggaagacgaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattaggaactta 22786063  T
Q  117 tgatacagctgaacaagcagctcaagcttatgatgc 152  Q
    ||||| |||||| |||| ||| |||||||| |||||    
T  22786062 tgatagagctgatcaagtagcacaagcttacgatgc 22786027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 22826542 - 22826408
Alignment:
Q  18 ggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcactttt 117  Q
    ||||||||||||| |  ||||||||||||||||| ||||  |  || ||||  ||||| |||||||||||| |||| | | ||||| ||||| ||||| |    
T  22826542 ggaaattcgttactgaggcgtgaggaagacaaaaaatggcagatatggtgcggaaatttgagacccatggaaaaaagcttctgtatagttagacacttat 22826443  T
Q  118 gatacagctgaacaagcagctcaagcttatgatgc 152  Q
    |||| ||||||||||||| | | |||||| |||||    
T  22826442 gatagagctgaacaagcaacacgagcttacgatgc 22826408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 22793802 - 22793857
Alignment:
Q  97 tatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgc 152  Q
    |||||||||||| |||||| |||||| |||||||||||||| | ||||||||||||    
T  22793802 tatgtatggttatgcacttatgatacggctgaacaagcagcacgagcttatgatgc 22793857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 22784083 - 22784187
Alignment:
Q  66 tgcaaaaattcgagacccatggagaaaac--catatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccactt 163  Q
    |||| |||||||| ||||||||| ||||   | |||||||||||| |||||| |||||| |||||||||||||| ||  |||| ||||| ||| ||| ||    
T  22784083 tgcagaaattcgaaacccatggaaaaaaatgcttatgtatggttatgcacttatgatacggctgaacaagcagcacacacttacgatgcaacaaccattt 22784182  T
Q  164 catac 168  Q
    |||||    
T  22784183 catac 22784187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 168
Target Start/End: Original strand, 22788447 - 22788551
Alignment:
Q  66 tgcaaaaattcgagacccatggagaaaac--catatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccactt 163  Q
    |||| |||||||| ||||||||| ||||   | |||||||||||| |||||| |||||| |||||||||||||| ||  |||| ||||| ||| ||| ||    
T  22788447 tgcagaaattcgaaacccatggaaaaaaatgcttatgtatggttatgcacttatgatacggctgaacaagcagcacacacttacgatgcaacaaccattt 22788546  T
Q  164 catac 168  Q
    |||||    
T  22788547 catac 22788551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 5613158 - 5613278
Alignment:
Q  17 aggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttt 116  Q
    ||||||||||||||||  || |||||||||||||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| ||||| ||||     
T  5613158 aggaaattcgttaccgaggcttgaggaagacaaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattaggaactta 5613257  T
Q  117 tgatacagctgaacaagcagc 137  Q
    ||||| |||||||||||||||    
T  5613258 tgataaagctgaacaagcagc 5613278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 5611365 - 5611500
Alignment:
Q  17 aggaaattcgttaccgctgcgtgaggaagacaaaatatggttgtaattgtgcaaaaattcgagacccatggagaaaaccatatgtatggttaggcacttt 116  Q
    ||||||||||||||||  ||||||||||||| ||| ||||  |  |  ||||  ||||| ||||||||||||||||| | | |||||| ||||| ||||     
T  5611365 aggaaattcgttaccgaggcgtgaggaagacgaaaaatggcagatacggtgcggaaatttgagacccatggagaaaagcttctgtatgattaggaactta 5611464  T
Q  117 tgatacagctgaacaagcagctcaagcttatgatgc 152  Q
    ||||| |||||| |||| ||| |||||||| |||||    
T  5611465 tgatagagctgatcaagtagcacaagcttacgatgc 5611500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 168
Target Start/End: Complemental strand, 5613444 - 5613340
Alignment:
Q  66 tgcaaaaattcgagacccatggagaaaac--catatgtatggttaggcacttttgatacagctgaacaagcagctcaagcttatgatgccacagccactt 163  Q
    |||| |||||||| ||||||||| ||||   | |||||||||||| |||||| |||||| |||||||||||||| ||  |||| ||||| ||| ||| ||    
T  5613444 tgcagaaattcgaaacccatggaaaaaaatgcttatgtatggttatgcacttatgatacggctgaacaagcagcacacacttacgatgcaacaaccattt 5613345  T
Q  164 catac 168  Q
    |||||    
T  5613344 catac 5613340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 4038759 - 4038807
Alignment:
Q  103 tggttaggcacttttgatacagctgaacaagcagctcaagcttatgatg 151  Q
    |||||||| |||||||||||||||||| |||| |||  |||||||||||    
T  4038759 tggttaggaacttttgatacagctgaagaagctgctagagcttatgatg 4038807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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