View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6331_low_12 (Length: 364)

Name: NF6331_low_12
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6331_low_12
NF6331_low_12
[»] chr8 (3 HSPs)
chr8 (18-173)||(31241072-31241223)
chr8 (17-169)||(31255168-31255316)
chr8 (275-364)||(31242563-31242652)
[»] chr6 (2 HSPs)
chr6 (18-145)||(7206035-7206158)
chr6 (309-364)||(7206155-7206210)
[»] chr7 (3 HSPs)
chr7 (280-364)||(17215855-17215939)
chr7 (275-364)||(17214557-17214646)
chr7 (223-274)||(17214263-17214314)
[»] scaffold0094 (3 HSPs)
scaffold0094 (277-364)||(10535-10622)
scaffold0094 (275-364)||(9256-9345)
scaffold0094 (223-274)||(10941-10992)
[»] chr5 (1 HSPs)
chr5 (87-162)||(9494706-9494781)


Alignment Details
Target: chr8 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 31241072 - 31241223
Alignment:
Q  18 atctgctactgattggagttccgaaaaagacgttgaattgcggcatgaacatcccctgaagtggaaattaataagagcttttacgttttcttgtgtgtca 117  Q
    ||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||     |||||||||| ||| ||||||||||||||||    
T  31241072 atctgctactgattggagttcctcgaaagacgttgaatggcggcatgaacatcccctgaagtgg----caataagagctcttatgttttcttgtgtgtca 31241167  T
Q  118 aagaatctcatctcttgaagctgtgaaagttgtgtggcatacaattgctctgctgc 173  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  31241168 aagaatcccatctcttgaagctgtgaaagttgggtggcatacaattgctctgctgc 31241223  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 31255168 - 31255316
Alignment:
Q  17 aatctgctactgattggagttccgaaaaagacgttgaattgcggcatgaacatcccctgaagtggaaattaataagagcttttacgttttcttgtgtgtc 116  Q
    |||||||||||||   | |||||  |||||||||| ||  || |||||||||| |||||||||||     |||||||||  ||| ||| |||||||||||    
T  31255168 aatctgctactgaccagtgttccctaaaagacgttcaacggccgcatgaacattccctgaagtgg----caataagagcccttatgttctcttgtgtgtc 31255263  T
Q  117 aaagaatctcatctcttgaagctgtgaaagttgtgtggcatacaattgctctg 169  Q
    |||||||| ||||||||||||||||| ||| || |||||||||||||||||||    
T  31255264 aaagaatcccatctcttgaagctgtgtaagctgggtggcatacaattgctctg 31255316  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 275 - 364
Target Start/End: Original strand, 31242563 - 31242652
Alignment:
Q  275 cctgcaatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccatttt 364  Q
    ||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||   ||||||| |||||||||||  |||||||    
T  31242563 cctgcaatgtctcaggttgtgaatacagagaaaggaaatctggattttgaatctcttctctgagaaaacttaaatcagcctcaccatttt 31242652  T

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Target: chr6 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 7206035 - 7206158
Alignment:
Q  18 atctgctactgattggagttccgaaaaagacgttgaattgcggcatgaacatcccctgaagtggaaattaataagagcttttacgttttcttgtgtgtca 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||    
T  7206035 atctgctactgattagagttccgaaaaagacgttgaattgcggcatgaacatcccctgaagtgga----aataagagcttttacgttttcttgtgtgtca 7206130  T
Q  118 aagaatctcatctcttgaagctgtgaaa 145  Q
    ||||||| ||||||||||||||||||||    
T  7206131 aagaatcccatctcttgaagctgtgaaa 7206158  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 7206155 - 7206210
Alignment:
Q  309 gaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccatttt 364  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  7206155 gaaatccggattttgaatctcttcttgaagaaaacataaatcagccttgccatttt 7206210  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 280 - 364
Target Start/End: Complemental strand, 17215939 - 17215855
Alignment:
Q  280 aatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccatttt 364  Q
    |||||||||||||||||||||||| |||||||  || |||||||||||||||||   ||||||| ||||||||||||||||||||    
T  17215939 aatgtctcaggttgtgaagataaataaaggaatcctagattttgaatctcttctctgagaaaacttaaatcagccttgccatttt 17215855  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 275 - 364
Target Start/End: Original strand, 17214557 - 17214646
Alignment:
Q  275 cctgcaatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccatttt 364  Q
    ||||||||||||||||||||||||| ||| |||||||  ||||||||||||||||||||   || |||| ||||||| ||||||||||||    
T  17214557 cctgcaatgtctcaggttgtgaagacaaacaaaggaatcctggattttgaatctcttctctgagtaaacttaaatcatccttgccatttt 17214646  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 274
Target Start/End: Original strand, 17214263 - 17214314
Alignment:
Q  223 gattcttgctgactatgatgaggtagaagaccttgttgagaagacaatggtt 274  Q
    |||||||||||| || |||||||||||||| ||||||| |||||||||||||    
T  17214263 gattcttgctgattaagatgaggtagaagatcttgttgggaagacaatggtt 17214314  T

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Target: scaffold0094 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 277 - 364
Target Start/End: Complemental strand, 10622 - 10535
Alignment:
Q  277 tgcaatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccatttt 364  Q
    |||||| ||| |||||||||||| ||| |||||||  ||| ||||||||||||||||  |||||||| ||||||||||||||||||||    
T  10622 tgcaatatctaaggttgtgaagacaaacaaaggaatcctgaattttgaatctcttctctaagaaaacttaaatcagccttgccatttt 10535  T

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Target: scaffold0094; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 275 - 364
Target Start/End: Original strand, 9256 - 9345
Alignment:
Q  275 cctgcaatgtctcaggttgtgaagataaagaaaggaaatctggattttgaatctcttcttgaagaaaacataaatcagccttgccatttt 364  Q
    |||||||||||| ||| |||||| | ||| |||||||  || |||||||||||||||||   ||||||| ||||||||||||||||||||    
T  9256 cctgcaatgtcttaggctgtgaaaagaaacaaaggaatcctagattttgaatctcttctctgagaaaacttaaatcagccttgccatttt 9345  T

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Target: scaffold0094; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 223 - 274
Target Start/End: Complemental strand, 10992 - 10941
Alignment:
Q  223 gattcttgctgactatgatgaggtagaagaccttgttgagaagacaatggtt 274  Q
    |||| ||||||| || |||||||||||||| ||||||| |||||||||||||    
T  10992 gatttttgctgattaagatgaggtagaagatcttgttgggaagacaatggtt 10941  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 162
Target Start/End: Complemental strand, 9494781 - 9494706
Alignment:
Q  87 aataagagcttttacgttttcttgtgtgtcaaagaatctcatctcttgaagctgtgaaagttgtgtggcatacaat 162  Q
    |||||||||  ||| ||| ||||||||||||||||||| ||||||||||||||| | ||| || || |||||||||    
T  9494781 aataagagcccttaagttctcttgtgtgtcaaagaatcccatctcttgaagctgggtaagctgggtagcatacaat 9494706  T

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