View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_low_14 (Length: 353)
Name: NF6331_low_14
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 28 - 353
Target Start/End: Complemental strand, 46108510 - 46108184
Alignment:
| Q |
28 |
atagatttgatctatgtttattttaagactcaacgagattaatcgattttgattggtgtaataataatatgataattgtgcaacaaataaaagagtaggg |
127 |
Q |
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| T |
46108510 |
atagacttgatctatgtttattttaagactcaacgagattaatcgattttgattggtgtaataataatatgatatttgtgcaacaaataaaagagtaggg |
46108411 |
T |
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| Q |
128 |
gtgtacgtggaaaatagtttaattaacattgaagtagggcaaatcttgcacaaaaacttttgtacc-nnnnnnnnnnnnnccaggataacagactttaac |
226 |
Q |
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| T |
46108410 |
gcgtacgtggaaaatagtttaattaacattgaagtagggcaaatcttgcacaaaaacttttgtaccaaaaaaaataaaaaccaggataacagactttaac |
46108311 |
T |
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| Q |
227 |
cttcacttcaccatatcaaataccaacaaccttttatcatttaagccctacttattgaactaattgcagttgacatgttacttattgcttgctagttggt |
326 |
Q |
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| T |
46108310 |
cttcacttcatcatatcaaataccaataaccttttataatttaagccctacttattgaactaattgcagttgacatgttacgtattgcttgctagttggt |
46108211 |
T |
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| Q |
327 |
tatactgattttgatttccacaaattt |
353 |
Q |
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| T |
46108210 |
tctcctgattttgatttccacaaattt |
46108184 |
T |
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