View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6331_low_16 (Length: 304)

Name: NF6331_low_16
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6331_low_16
NF6331_low_16
[»] chr8 (11 HSPs)
chr8 (1-141)||(32805914-32806054)
chr8 (142-185)||(11335646-11335689)
chr8 (142-185)||(10117049-10117092)
chr8 (139-185)||(40640354-40640400)
chr8 (142-175)||(9015895-9015928)
chr8 (142-171)||(20524198-20524227)
chr8 (144-185)||(34326263-34326304)
chr8 (142-175)||(45045456-45045489)
chr8 (142-182)||(2805892-2805932)
chr8 (141-185)||(33385249-33385293)
chr8 (141-185)||(44521326-44521370)
[»] chr6 (4 HSPs)
chr6 (3-141)||(6094865-6095003)
chr6 (142-185)||(18886387-18886430)
chr6 (139-174)||(33689258-33689293)
chr6 (142-182)||(11746307-11746347)
[»] chr2 (9 HSPs)
chr2 (141-185)||(4563875-4563919)
chr2 (142-185)||(15859630-15859673)
chr2 (144-174)||(31211242-31211272)
chr2 (139-185)||(32143482-32143528)
chr2 (144-177)||(604883-604916)
chr2 (144-177)||(26269374-26269407)
chr2 (144-177)||(31175107-31175140)
chr2 (141-174)||(32218654-32218687)
chr2 (142-182)||(23377963-23378003)
[»] scaffold0631 (1 HSPs)
scaffold0631 (142-185)||(4365-4408)
[»] chr5 (14 HSPs)
chr5 (142-185)||(33075083-33075126)
chr5 (139-185)||(14772622-14772668)
chr5 (142-185)||(71277-71320)
chr5 (142-185)||(5984062-5984105)
chr5 (141-172)||(15549403-15549434)
chr5 (142-185)||(35032349-35032392)
chr5 (145-184)||(41814402-41814441)
chr5 (151-185)||(26045283-26045317)
chr5 (139-177)||(37554423-37554461)
chr5 (139-177)||(37685046-37685084)
chr5 (141-182)||(31691337-31691378)
chr5 (144-172)||(14642097-14642125)
chr5 (145-185)||(19868940-19868980)
chr5 (139-171)||(30778032-30778064)
[»] chr1 (7 HSPs)
chr1 (142-185)||(48083583-48083626)
chr1 (142-185)||(34953975-34954018)
chr1 (144-185)||(42761471-42761512)
chr1 (141-185)||(13048675-13048719)
chr1 (141-185)||(13053672-13053716)
chr1 (139-185)||(6758564-6758610)
chr1 (141-174)||(13043418-13043451)
[»] scaffold0149 (1 HSPs)
scaffold0149 (142-185)||(24624-24667)
[»] chr7 (13 HSPs)
chr7 (142-185)||(22752578-22752621)
chr7 (145-185)||(21886485-21886525)
chr7 (139-182)||(30138864-30138907)
chr7 (139-174)||(33935027-33935062)
chr7 (148-183)||(37489535-37489570)
chr7 (144-183)||(44416613-44416652)
chr7 (142-184)||(4089868-4089910)
chr7 (141-183)||(9930408-9930450)
chr7 (144-185)||(2943293-2943334)
chr7 (142-183)||(31813431-31813472)
chr7 (139-167)||(2534016-2534044)
chr7 (142-174)||(21586893-21586925)
chr7 (139-171)||(24617829-24617861)
[»] chr4 (18 HSPs)
chr4 (142-185)||(3511727-3511770)
chr4 (142-184)||(38298109-38298151)
chr4 (152-185)||(10308253-10308286)
chr4 (142-182)||(18423913-18423953)
chr4 (139-183)||(35151737-35151781)
chr4 (142-185)||(21142169-21142212)
chr4 (142-185)||(35425270-35425313)
chr4 (142-185)||(40952427-40952470)
chr4 (144-185)||(4406322-4406363)
chr4 (144-177)||(24331451-24331484)
chr4 (139-172)||(36786181-36786214)
chr4 (144-185)||(54508187-54508228)
chr4 (142-182)||(4484095-4484135)
chr4 (142-182)||(4708615-4708655)
chr4 (142-182)||(16170931-16170971)
chr4 (144-172)||(38938072-38938100)
chr4 (139-175)||(46803436-46803472)
chr4 (142-182)||(55416321-55416361)
[»] chr3 (12 HSPs)
chr3 (142-185)||(10872751-10872794)
chr3 (142-185)||(22497030-22497073)
chr3 (142-185)||(24722766-24722809)
chr3 (139-185)||(3648775-3648821)
chr3 (142-183)||(35987510-35987551)
chr3 (142-182)||(50466834-50466874)
chr3 (142-185)||(29389345-29389388)
chr3 (142-185)||(47334660-47334703)
chr3 (142-185)||(51060681-51060724)
chr3 (142-172)||(26243710-26243740)
chr3 (141-185)||(7601932-7601976)
chr3 (145-185)||(45736769-45736809)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 32806054 - 32805914
Alignment:
Q  1 aaataccatcaaatcttgtctctgcaaacaaaaccagacctgcagcgttgcgcacaaccatcccccaacctgtcgtaccatcactaaaacacccggcatc 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32806054 aaataccatcaaatcttgtctctgcacacaaaaccagacctgcagcgttgcgcacaaccatcccccaacctgtcgtaccatcactaaaacacccggcatc 32805955  T
Q  101 gacattgatcttaacataaccactaggaggtggaatccact 141  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32805954 gacattgatcttaacataaccactaggaggtggaatccact 32805914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 11335646 - 11335689
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||||||||||||||||||||||||||  |||||||||||    
T  11335646 atatacattattaattgaatgaatctaaaatgcaaagttttgct 11335689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 10117049 - 10117092
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| |||||||||||||||||||||| |||| |||||||    
T  10117049 atatacatcattaattgaatgaatctaaaatgtaaatttttgct 10117092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 40640354 - 40640400
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||| ||||| ||||||||||||||||||||||  |||||||||||    
T  40640354 actatgtacatcattaattgaatgaatctaaaatgcaaagttttgct 40640400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 9015895 - 9015928
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatata 175  Q
    |||||||| |||||||||||||||||||||||||    
T  9015895 atatacatcattaattgaatgaatctaaaatata 9015928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 20524227 - 20524198
Alignment:
Q  142 atatacattattaattgaatgaatctaaaa 171  Q
    ||||||||||||||||||||||||||||||    
T  20524227 atatacattattaattgaatgaatctaaaa 20524198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 34326304 - 34326263
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| ||||||||||||||||||||||  |||||||||||    
T  34326304 atacatcattaattgaatgaatctaaaatgcaaagttttgct 34326263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 45045456 - 45045489
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatata 175  Q
    |||||||| |||||||||||||||||||||||||    
T  45045456 atatacatcattaattgaatgaatctaaaatata 45045489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 2805892 - 2805932
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    |||||||||||||||||||||||| |||||| |||| ||||    
T  2805892 atatacattattaattgaatgaatttaaaatgtaaaatttt 2805932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 33385249 - 33385293
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| || |||||||||||||||||||||| ||| ||||||||    
T  33385249 tatatatatcattaattgaatgaatctaaaatgtaaggttttgct 33385293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Original strand, 44521326 - 44521370
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||  ||||||||||||||||||||||  |||||||||||    
T  44521326 tatatacaccattaattgaatgaatctaaaattcaaagttttgct 44521370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 131; Significance: 6e-68; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 3 - 141
Target Start/End: Original strand, 6094865 - 6095003
Alignment:
Q  3 ataccatcaaatcttgtctctgcaaacaaaaccagacctgcagcgttgcgcacaaccatcccccaacctgtcgtaccatcactaaaacacccggcatcga 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6094865 ataccatcaaatcttgtctctgcaaacaaaaccagacctgcagcgttgcgcacaaccatcccccaacctgtcgtaccatcactaaaacacccggcatcga 6094964  T
Q  103 cattgatcttaacataaccactaggaggtggaatccact 141  Q
    | |||||||||||||||||||||||| ||||||||||||    
T  6094965 cgttgatcttaacataaccactaggaagtggaatccact 6095003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 18886387 - 18886430
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| ||||||||||||||| |||||||||||||||||||||    
T  18886387 atatacgttattaattgaatgactctaaaatataaagttttgct 18886430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 33689293 - 33689258
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatat 174  Q
    ||||||||||||||||||||||||||| ||||||||    
T  33689293 actatatacattattaattgaatgaatataaaatat 33689258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 11746307 - 11746347
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    |||||||| |||||||||||||||||||||| |||| ||||    
T  11746307 atatacatcattaattgaatgaatctaaaatgtaaattttt 11746347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 4563919 - 4563875
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  4563919 tatatacattattaattgaatgaatctaaaatataaacttttgct 4563875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 15859630 - 15859673
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| ||||||||||||||||||||||||| | |||||||    
T  15859630 atatacatcattaattgaatgaatctaaaatatagatttttgct 15859673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 174
Target Start/End: Complemental strand, 31211272 - 31211242
Alignment:
Q  144 atacattattaattgaatgaatctaaaatat 174  Q
    |||||||||||||||||||||||||||||||    
T  31211272 atacattattaattgaatgaatctaaaatat 31211242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 32143482 - 32143528
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||| | ||||||||||||||| |||||| ||||||||||||    
T  32143482 actatatacttcattaattgaatgaatttaaaatgtaaagttttgct 32143528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 604916 - 604883
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaa 177  Q
    |||||||||||||||||||||||||||| |||||    
T  604916 atacattattaattgaatgaatctaaaaaataaa 604883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Original strand, 26269374 - 26269407
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaa 177  Q
    |||||||||||||| |||||||||||||||||||    
T  26269374 atacattattaattaaatgaatctaaaatataaa 26269407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 31175140 - 31175107
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaa 177  Q
    |||||| |||||||||||||||||||||||||||    
T  31175140 atacatcattaattgaatgaatctaaaatataaa 31175107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 32218654 - 32218687
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatat 174  Q
    ||||||||| ||||||||||||||||||||||||    
T  32218654 tatatacatcattaattgaatgaatctaaaatat 32218687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 23378003 - 23377963
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    |||||||| ||||||||||||||||||||||  ||||||||    
T  23378003 atatacatcattaattgaatgaatctaaaatgcaaagtttt 23377963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0631 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0631
Description:

Target: scaffold0631; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 4408 - 4365
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  4408 atatacgttattaattgaatgaatctaaaatataaagttttgct 4365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 33075126 - 33075083
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  33075126 atatacgttattaattgaatgaatctaaaatataaagttttgct 33075083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 14772622 - 14772668
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||    
T  14772622 actatatacatcattaattgaattaatctaaaatataaagttttgct 14772668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 71320 - 71277
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| ||||||||||||||||||||||||| | |||||||    
T  71320 atatacatcattaattgaatgaatctaaaatatagatttttgct 71277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 5984062 - 5984105
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| ||||||||||||||||||||||  |||||||||||    
T  5984062 atatacatcattaattgaatgaatctaaaatgcaaagttttgct 5984105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 172
Target Start/End: Original strand, 15549403 - 15549434
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaat 172  Q
    ||||||||||||||||||||||||||||||||    
T  15549403 tatatacattattaattgaatgaatctaaaat 15549434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 35032349 - 35032392
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| |||||||||||||||||||||| |||| |||||||    
T  35032349 atatacataattaattgaatgaatctaaaatgtaaatttttgct 35032392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 41814441 - 41814402
Alignment:
Q  145 tacattattaattgaatgaatctaaaatataaagttttgc 184  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  41814441 tacattattaattgaatgaatctaaaatgtaaatttttgc 41814402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 185
Target Start/End: Complemental strand, 26045317 - 26045283
Alignment:
Q  151 attaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||||||||||||||||||||| |||||||    
T  26045317 attaattgaatgaatctaaaatataaatttttgct 26045283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 37554423 - 37554461
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatataaa 177  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  37554423 actacatacattattaattgaatgaatctaaaaaataaa 37554461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 37685046 - 37685084
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatataaa 177  Q
    |||| |||||||||||||||||||||||||||| |||||    
T  37685046 actacatacattattaattgaatgaatctaaaaaataaa 37685084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 31691337 - 31691378
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    ||||||||| ||||||||||||||||| ||||||||| ||||    
T  31691337 tatatacatcattaattgaatgaatctcaaatataaattttt 31691378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 172
Target Start/End: Original strand, 14642097 - 14642125
Alignment:
Q  144 atacattattaattgaatgaatctaaaat 172  Q
    |||||||||||||||||||||||||||||    
T  14642097 atacattattaattgaatgaatctaaaat 14642125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 19868980 - 19868940
Alignment:
Q  145 tacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||||| ||||||||||||||||||| | |||||||    
T  19868980 tacattattaaatgaatgaatctaaaatatagatttttgct 19868940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 30778064 - 30778032
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaa 171  Q
    |||| ||||||||||||||||||||||||||||    
T  30778064 actaaatacattattaattgaatgaatctaaaa 30778032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 48083583 - 48083626
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  48083583 atatacgttattaattgaatgaatctaaaatataaagttttgct 48083626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 34953975 - 34954018
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  34953975 atatacatcattaattgaatgaatctaaaatataaatttttgct 34954018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 42761512 - 42761471
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| |||||||||||||||||||||| ||||||||||||    
T  42761512 atacatcattaattgaatgaatctaaaatgtaaagttttgct 42761471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 13048719 - 13048675
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||| |||||||||||||||||||||||| || |||||||    
T  13048719 tatatacatcattaattgaatgaatctaaaatattaatttttgct 13048675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 13053716 - 13053672
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||| |||||||||||||||||||||||| || |||||||    
T  13053716 tatatacatcattaattgaatgaatctaaaatattaatttttgct 13053672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 185
Target Start/End: Complemental strand, 6758610 - 6758564
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||||| ||||||||||||||| ||||||  |||||||||||    
T  6758610 actatatacatcattaattgaatgaatgtaaaatgcaaagttttgct 6758564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 13043418 - 13043451
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatat 174  Q
    ||||||||| ||||||||||||||||||||||||    
T  13043418 tatatacatcattaattgaatgaatctaaaatat 13043451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 24667 - 24624
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  24667 atatacgttattaattgaatgaatctaaaatataatgttttgct 24624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 22752621 - 22752578
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||||||| ||||||||||||||||||||||| |||||||    
T  22752621 atatacattatttattgaatgaatctaaaatataaatttttgct 22752578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 21886525 - 21886485
Alignment:
Q  145 tacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||| ||||||||||||||||||||||||||| |||||||    
T  21886525 tacatcattaattgaatgaatctaaaatataaatttttgct 21886485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 182
Target Start/End: Original strand, 30138864 - 30138907
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||    
T  30138864 actatatacatcattaattgaatgaatctaaaatgtaaattttt 30138907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 174
Target Start/End: Complemental strand, 33935062 - 33935027
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatat 174  Q
    ||||||||||||||||| ||||||||||||||||||    
T  33935062 actatatacattattaaatgaatgaatctaaaatat 33935027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 183
Target Start/End: Complemental strand, 37489570 - 37489535
Alignment:
Q  148 attattaattgaatgaatctaaaatataaagttttg 183  Q
    |||||||||||||||||||||||||||||| |||||    
T  37489570 attattaattgaatgaatctaaaatataaatttttg 37489535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 44416613 - 44416652
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaagttttg 183  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  44416613 atacataattaattgaatgaatctaaaatataaatttttg 44416652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 4089868 - 4089910
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgc 184  Q
    |||||||| ||||||||||||||| ||||||||||| ||||||    
T  4089868 atatacatcattaattgaatgaatataaaatataaatttttgc 4089910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Complemental strand, 9930450 - 9930408
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatataaagttttg 183  Q
    ||||||||| ||||||| ||||||||||||||||||| |||||    
T  9930450 tatatacataattaattaaatgaatctaaaatataaatttttg 9930408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 2943293 - 2943334
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||||||||||||||||| ||||||||||  |||||||    
T  2943293 atacattattaattgaatgaatgtaaaatataattttttgct 2943334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 183
Target Start/End: Complemental strand, 31813472 - 31813431
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttg 183  Q
    |||||||| |||||||||||||||||||||| |||| |||||    
T  31813472 atatacatcattaattgaatgaatctaaaatgtaaatttttg 31813431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 2534016 - 2534044
Alignment:
Q  139 actatatacattattaattgaatgaatct 167  Q
    |||||||||||||||||||||||||||||    
T  2534016 actatatacattattaattgaatgaatct 2534044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 21586893 - 21586925
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatat 174  Q
    |||||||| ||||||||||||||||||||||||    
T  21586893 atatacatcattaattgaatgaatctaaaatat 21586925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 24617861 - 24617829
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaa 171  Q
    ||||||||||||||| |||||||||||||||||    
T  24617861 actatatacattatttattgaatgaatctaaaa 24617829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 3511770 - 3511727
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| |||||||||||||||||||||| ||||||||||||    
T  3511770 atatacatcattaattgaatgaatctaaaatgtaaagttttgct 3511727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 142 - 184
Target Start/End: Complemental strand, 38298151 - 38298109
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgc 184  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  38298151 atatacatcattaattgaatgaatctaaaatataaaattttgc 38298109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 152 - 185
Target Start/End: Complemental strand, 10308286 - 10308253
Alignment:
Q  152 ttaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||||||||||||||||||||||||||||    
T  10308286 ttaattgaatgaatctaaaatataaagttttgct 10308253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 18423953 - 18423913
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  18423953 atatacatcattaattgaatgaatctaaaatataaattttt 18423913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 35151737 - 35151781
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatataaagttttg 183  Q
    ||||||||||| || |||||||||||||||||||| |||||||||    
T  35151737 actatatacatcatcaattgaatgaatctaaaatacaaagttttg 35151781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 21142169 - 21142212
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| ||||||| ||||||||||||||||||| |||||||    
T  21142169 atatacatcattaattaaatgaatctaaaatataaacttttgct 21142212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 35425313 - 35425270
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| ||||| |||||||||||||||| ||||||||||||    
T  35425313 atatacatcattaaatgaatgaatctaaaatttaaagttttgct 35425270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 40952427 - 40952470
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||  |||||||||||||||||||||||||| |||||||    
T  40952427 atatacatatttaattgaatgaatctaaaatataaatttttgct 40952470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 4406322 - 4406363
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| |||||||||||||||| |||||||||| |||||||    
T  4406322 atacatcattaattgaatgaatccaaaatataaatttttgct 4406363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 24331484 - 24331451
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaa 177  Q
    |||||||||||||||||||||||||||| |||||    
T  24331484 atacattattaattgaatgaatctaaaaaataaa 24331451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 172
Target Start/End: Complemental strand, 36786214 - 36786181
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaat 172  Q
    ||||||||||| ||||||||||||||||||||||    
T  36786214 actatatacatcattaattgaatgaatctaaaat 36786181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 54508228 - 54508187
Alignment:
Q  144 atacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| ||| ||||||||||||||||||||||| |||||||    
T  54508228 atacatcatttattgaatgaatctaaaatataaatttttgct 54508187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 4484135 - 4484095
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    |||||||| ||||||||||||||||||||||  ||||||||    
T  4484135 atatacatcattaattgaatgaatctaaaatgcaaagtttt 4484095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Original strand, 4708615 - 4708655
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    |||||||||||||||| ||||||| ||||||||||| ||||    
T  4708615 atatacattattaattaaatgaatttaaaatataaattttt 4708655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 16170971 - 16170931
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    |||||||  |||||||||||||||||||||| |||||||||    
T  16170971 atatacaccattaattgaatgaatctaaaatgtaaagtttt 16170931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 38938100 - 38938072
Alignment:
Q  144 atacattattaattgaatgaatctaaaat 172  Q
    |||||||||||||||||||||||||||||    
T  38938100 atacattattaattgaatgaatctaaaat 38938072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 46803472 - 46803436
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatata 175  Q
    ||||||||||| ||||||| |||||||||||||||||    
T  46803472 actatatacataattaatttaatgaatctaaaatata 46803436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 55416361 - 55416321
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    |||||||| ||||||||||||||||| ||||||||| ||||    
T  55416361 atatacatcattaattgaatgaatctcaaatataaattttt 55416321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 10872751 - 10872794
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| ||||||||||||||||||||||||||| |||||||    
T  10872751 atatacatcattaattgaatgaatctaaaatataaatttttgct 10872794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 22497030 - 22497073
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||| |||||||||||||||||||||||| ||||||||||||    
T  22497030 atatacgttattaattgaatgaatctaaaatgtaaagttttgct 22497073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 24722766 - 24722809
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  24722766 atatacattattaattgagtgaatctaaaatgtaaagttttgct 24722809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 185
Target Start/End: Original strand, 3648775 - 3648821
Alignment:
Q  139 actatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||||| ||| ||||||||||| |||||||||||||||||||    
T  3648775 actatatacatcattgattgaatgaatgtaaaatataaagttttgct 3648821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 183
Target Start/End: Original strand, 35987510 - 35987551
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttg 183  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  35987510 atatacattattaattgaataaatctaaaatataaaattttg 35987551  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 50466874 - 50466834
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagtttt 182  Q
    |||||||| ||||||||||||||||||||||||||| ||||    
T  50466874 atatacatcattaattgaatgaatctaaaatataaattttt 50466834  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 29389388 - 29389345
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| |||||||||| |||||||||||||||| |||||||    
T  29389388 atatacatcattaattgaacgaatctaaaatataaatttttgct 29389345  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 47334703 - 47334660
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||| ||||||||||||||| ||||||| |||||||||||    
T  47334703 atatacatcattaattgaatgaatttaaaatacaaagttttgct 47334660  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 142 - 185
Target Start/End: Complemental strand, 51060724 - 51060681
Alignment:
Q  142 atatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    |||||||||||||||||||| |||||||||| |||| |||||||    
T  51060724 atatacattattaattgaattaatctaaaatgtaaatttttgct 51060681  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 172
Target Start/End: Complemental strand, 26243740 - 26243710
Alignment:
Q  142 atatacattattaattgaatgaatctaaaat 172  Q
    |||||||||||||||||||||||||||||||    
T  26243740 atatacattattaattgaatgaatctaaaat 26243710  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 7601976 - 7601932
Alignment:
Q  141 tatatacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||||||  ||||||||||||||||||||||  |||||||||||    
T  7601976 tatatacaccattaattgaatgaatctaaaattcaaagttttgct 7601932  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 185
Target Start/End: Original strand, 45736769 - 45736809
Alignment:
Q  145 tacattattaattgaatgaatctaaaatataaagttttgct 185  Q
    ||||| ||||||||||||||| ||||||||||| |||||||    
T  45736769 tacatcattaattgaatgaatttaaaatataaaattttgct 45736809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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