View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_low_17 (Length: 281)
Name: NF6331_low_17
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 149; Significance: 9e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 9244034 - 9244306
Alignment:
| Q |
1 |
attaacttgcttgaaattgtatgaattcggaccttaggcgattccccaacggaaacccaaacatgagtagcatttggatgacatagaattggtgacgnnn |
100 |
Q |
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| T |
9244034 |
attaacttgcttgaaactgtatgaattcggactttaggagatcccccaacggaaacccaaacacgagtagcatttgcatgacatagaattggttacgaga |
9244133 |
T |
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| Q |
101 |
nnnnngaa--gtcatttgtaacattatggttgaccaatatcaccaattctatatcacccgaatgctaccc-gataaatgttgttgtcaacccgaaaatca |
197 |
Q |
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| T |
9244134 |
aaaaaaaaaagtcacttgtaatattgtggttgaccaatatcaccaattctatgtcacccaattgctaccccgataaatgttgttgtcaacaagaaaatca |
9244233 |
T |
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| Q |
198 |
tgaatttctcaacaatctgtaac----agcttgtactttctcaactaaatgtccattatgaaagcaatattgt |
266 |
Q |
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| T |
9244234 |
tgaatttctcaacaatctgtaactaacagcttgtactttctcaactaaatgtccattatgaaagcaatattgt |
9244306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 7975927 - 7975978
Alignment:
| Q |
117 |
taacattatggttgaccaatatcaccaattctatatcacccgaatgctaccc |
168 |
Q |
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| T |
7975927 |
taacattgtggttgaccaatgtcaccaattctatgtcactcaaatgctaccc |
7975978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 168
Target Start/End: Original strand, 28647164 - 28647218
Alignment:
| Q |
114 |
ttgtaacattatggttgaccaatatcaccaattctatatcacccgaatgctaccc |
168 |
Q |
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| T |
28647164 |
ttgtaacattgtggttgaccaatgtcacgaattctatgtcacccaagtgctaccc |
28647218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 157
Target Start/End: Complemental strand, 28647128 - 28647088
Alignment:
| Q |
117 |
taacattatggttgaccaatatcaccaattctatatcaccc |
157 |
Q |
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| T |
28647128 |
taacattgtggttgaccaatgtcaccaattctatgtcaccc |
28647088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 37618809 - 37618865
Alignment:
| Q |
114 |
ttgtaacattatggttgaccaatatcaccaattctatatcacccgaatgctacccga |
170 |
Q |
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| T |
37618809 |
ttgtaacattgtgtttcaccaatgtcaccaattctatgtcacccaagtgctacccga |
37618865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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