View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6331_low_18 (Length: 270)
Name: NF6331_low_18
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_18 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 27509810 - 27510055
Alignment:
| Q |
5 |
aagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttgattactttatcat |
104 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27509810 |
aagataatgatagtatttccttaatacccaacttcgtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttgattactttatcat |
27509909 |
T |
|
| Q |
105 |
caaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
27509910 |
caaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaacc-actctataatgctttgaaaac-aaaaatatga |
27510007 |
T |
|
| Q |
205 |
agcggcataattaatattactaattcttctagaaatactgcttaaatt |
252 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27510008 |
agccgcataattaatattactaattcttccagaaatactgcttaaatt |
27510055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 27271594 - 27271351
Alignment:
| Q |
5 |
aagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttgattactttatcat |
104 |
Q |
| |
|
|||||||||||||| |||||| ||| || ||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
27271594 |
aagataatgataatttttccttaatgccgaacttggcagcagaaagtacataaggcaactaataagagtacatctcacaatttgttgattacttaatcat |
27271495 |
T |
|
| Q |
105 |
caaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatga |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| | |
|
|
| T |
27271494 |
caaatcactaaagtgctaaaaagtacacacaaccaatagagtacatttctcaactcagaatagaacca---ctctaatgctttgaaaac-aaaaatataa |
27271399 |
T |
|
| Q |
205 |
agcggcataattaatattactaattcttctagaaatactgcttaaatt |
252 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
27271398 |
agcgacatgattaatattactaattcttccagaaatagtgcttaaatt |
27271351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 252
Target Start/End: Complemental strand, 39211126 - 39210878
Alignment:
| Q |
5 |
aagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttgattactttatcat |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39211126 |
aagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttaattactttatcat |
39211027 |
T |
|
| Q |
105 |
caaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatga |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
39211026 |
caaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaacc-actctataatgctttgaaaac-aaaaatatga |
39210929 |
T |
|
| Q |
205 |
agcggcataattaa---tattactaattcttctagaaatactgcttaaatt |
252 |
Q |
| |
|
|| ||||||||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
39210928 |
agtggcataattaatactattactaattcttccagaaatactgcttaaatt |
39210878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 5 - 252
Target Start/End: Original strand, 29707262 - 29707505
Alignment:
| Q |
5 |
aagataatgataatatttcctcaatacccaacttggtagcagaaagtacacaaggcaaataataagagtacatctcacaatttgttgattactttatcat |
104 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29707262 |
aagataatgataatttttccttaatacccaacttggtagcagaaagtacataaggcaactaataagagtacatctcacaatttgttgattacttaatcat |
29707361 |
T |
|
| Q |
105 |
caaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactcagaatagaaccaactctataatgctttgaaaacaaaaaatatga |
204 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| | |
|
|
| T |
29707362 |
caaatcactaaagtgctaaaaagtacacacaaccaatagagtacatttctcaactcagaatagaacca---ctctaatgctttgaaaac-aaaaatataa |
29707457 |
T |
|
| Q |
205 |
agcggcataattaatattactaattcttctagaaatactgcttaaatt |
252 |
Q |
| |
|
|||| ||| |||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
29707458 |
agcgacatgattaatattactaattcttcaagaaatactacttaaatt |
29707505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 42093349 - 42093510
Alignment:
| Q |
5 |
aagataatgataatatttcctcaatacccaac----ttggtagcagaaa-gtacacaaggcaaataataagagtacatctcacaatttgttgattacttt |
99 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||||||||||| ||||| ||||||| |||||| || ||||||||||||||||||||||||| |
|
|
| T |
42093349 |
aagataatgataatttttccttaatacccaaccaacttggtagcagaaaagtacataaggcaactaataaaaggacatctcacaatttgttgattactta |
42093448 |
T |
|
| Q |
100 |
atcatcaaatcactaaagtggtaaaaagtacacacaaccaaaagagtacatttctcaactca |
161 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
42093449 |
atcatcaaatcacttaagtgcttaaaagtacaactaaccaaaacagtacatttctcaactca |
42093510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University