View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6331_low_19 (Length: 262)

Name: NF6331_low_19
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6331_low_19
NF6331_low_19
[»] chr7 (33 HSPs)
chr7 (11-89)||(42066834-42066912)
chr7 (17-89)||(26492598-26492670)
chr7 (11-86)||(34773938-34774013)
chr7 (16-86)||(45198808-45198878)
chr7 (16-87)||(1485030-1485101)
chr7 (16-86)||(32684900-32684970)
chr7 (16-89)||(22927642-22927715)
chr7 (16-89)||(46822247-46822320)
chr7 (17-89)||(20116814-20116886)
chr7 (13-89)||(31235556-31235632)
chr7 (18-86)||(35495950-35496018)
chr7 (16-87)||(2843015-2843086)
chr7 (16-85)||(433467-433536)
chr7 (16-89)||(23085753-23085826)
chr7 (17-89)||(6559110-6559182)
chr7 (17-89)||(23425145-23425217)
chr7 (17-76)||(7640560-7640619)
chr7 (17-89)||(21266623-21266697)
chr7 (16-89)||(1448604-1448677)
chr7 (24-89)||(14627670-14627735)
chr7 (16-89)||(26583942-26584015)
chr7 (16-84)||(42311510-42311578)
chr7 (17-84)||(35667009-35667076)
chr7 (11-86)||(43369549-43369624)
chr7 (22-89)||(46818176-46818243)
chr7 (16-89)||(32521701-32521774)
chr7 (16-77)||(46339286-46339347)
chr7 (45-89)||(12502024-12502068)
chr7 (45-89)||(12527658-12527702)
chr7 (17-89)||(23786808-23786880)
chr7 (16-86)||(19560228-19560298)
chr7 (11-84)||(37849066-37849139)
chr7 (16-48)||(48208166-48208198)
[»] chr1 (42 HSPs)
chr1 (13-89)||(30879308-30879384)
chr1 (16-89)||(50165871-50165944)
chr1 (11-89)||(31837065-31837143)
chr1 (16-89)||(5324331-5324404)
chr1 (16-89)||(9686977-9687050)
chr1 (16-89)||(51868417-51868490)
chr1 (16-87)||(19715669-19715740)
chr1 (24-86)||(35584398-35584460)
chr1 (16-89)||(11454173-11454246)
chr1 (16-89)||(20266538-20266611)
chr1 (16-89)||(27914879-27914952)
chr1 (16-89)||(30818136-30818209)
chr1 (16-89)||(34519364-34519437)
chr1 (17-89)||(25406056-25406128)
chr1 (17-89)||(33291190-33291262)
chr1 (16-86)||(7342958-7343028)
chr1 (16-89)||(9172726-9172799)
chr1 (16-89)||(9180708-9180781)
chr1 (16-89)||(11709479-11709552)
chr1 (16-89)||(48217673-48217746)
chr1 (9-89)||(3871636-3871716)
chr1 (16-84)||(45805606-45805674)
chr1 (26-89)||(14545721-14545784)
chr1 (11-89)||(9919619-9919695)
chr1 (16-89)||(19723549-19723622)
chr1 (17-86)||(32676910-32676979)
chr1 (16-89)||(38520307-38520380)
chr1 (16-89)||(50148606-50148679)
chr1 (16-89)||(51872099-51872172)
chr1 (17-89)||(41081476-41081548)
chr1 (17-89)||(45425839-45425910)
chr1 (16-85)||(28035373-28035441)
chr1 (16-89)||(33816940-33817013)
chr1 (16-89)||(33876410-33876483)
chr1 (18-89)||(50271912-50271983)
chr1 (16-86)||(39987654-39987724)
chr1 (16-52)||(5701495-5701531)
chr1 (16-84)||(31130370-31130438)
chr1 (16-78)||(40646911-40646971)
chr1 (40-86)||(14872893-14872939)
chr1 (17-89)||(27872974-27873047)
chr1 (40-89)||(34878067-34878116)
[»] chr6 (25 HSPs)
chr6 (13-84)||(7875821-7875892)
chr6 (19-89)||(12653179-12653249)
chr6 (16-89)||(8497200-8497273)
chr6 (13-84)||(7880879-7880950)
chr6 (16-89)||(4984339-4984412)
chr6 (16-89)||(17237058-17237131)
chr6 (16-89)||(23947089-23947162)
chr6 (16-89)||(25064468-25064541)
chr6 (16-86)||(12059548-12059618)
chr6 (16-89)||(8027890-8027963)
chr6 (17-89)||(16419391-16419463)
chr6 (16-84)||(33740355-33740423)
chr6 (24-85)||(4468792-4468853)
chr6 (16-86)||(4088692-4088762)
chr6 (23-89)||(7028094-7028160)
chr6 (17-83)||(17334986-17335052)
chr6 (16-86)||(35001822-35001892)
chr6 (16-89)||(28634885-28634958)
chr6 (16-84)||(34489433-34489501)
chr6 (16-86)||(12168912-12168980)
chr6 (25-84)||(20619662-20619721)
chr6 (16-89)||(3173984-3174057)
chr6 (16-72)||(8196196-8196252)
chr6 (40-89)||(606456-606505)
chr6 (17-58)||(16892619-16892660)
[»] chr8 (30 HSPs)
chr8 (16-89)||(14906695-14906768)
chr8 (13-89)||(9072954-9073030)
chr8 (16-89)||(4809203-4809276)
chr8 (16-89)||(29777458-29777531)
chr8 (16-89)||(9498371-9498444)
chr8 (16-89)||(44099708-44099781)
chr8 (16-89)||(11725919-11725993)
chr8 (11-89)||(32724253-32724331)
chr8 (16-89)||(33896325-33896398)
chr8 (17-89)||(27746887-27746959)
chr8 (13-89)||(34612040-34612116)
chr8 (16-78)||(11267247-11267309)
chr8 (16-86)||(43889899-43889969)
chr8 (17-70)||(2656110-2656163)
chr8 (16-85)||(19876437-19876506)
chr8 (17-86)||(23851269-23851338)
chr8 (16-86)||(9619132-9619202)
chr8 (16-62)||(11464410-11464456)
chr8 (35-89)||(35580678-35580732)
chr8 (16-86)||(44578269-44578339)
chr8 (16-77)||(37565663-37565724)
chr8 (20-88)||(17949761-17949829)
chr8 (13-89)||(42447804-42447875)
chr8 (16-86)||(28240080-28240150)
chr8 (17-89)||(43135356-43135423)
chr8 (11-86)||(17427000-17427075)
chr8 (16-75)||(43192133-43192192)
chr8 (39-89)||(30568108-30568158)
chr8 (24-86)||(33342680-33342742)
chr8 (40-89)||(1236485-1236534)
[»] chr5 (33 HSPs)
chr5 (16-89)||(21060055-21060128)
chr5 (13-89)||(30298440-30298516)
chr5 (16-89)||(7242018-7242091)
chr5 (16-89)||(7247193-7247266)
chr5 (16-89)||(34881951-34882024)
chr5 (13-89)||(16981523-16981599)
chr5 (17-89)||(27752160-27752232)
chr5 (14-89)||(7150107-7150182)
chr5 (18-85)||(18677242-18677309)
chr5 (20-86)||(781626-781692)
chr5 (16-86)||(3271177-3271247)
chr5 (16-89)||(30299078-30299151)
chr5 (17-89)||(10649877-10649949)
chr5 (17-89)||(27266631-27266703)
chr5 (18-89)||(30371857-30371928)
chr5 (11-86)||(43008090-43008165)
chr5 (16-89)||(19280709-19280782)
chr5 (16-84)||(35475115-35475183)
chr5 (16-83)||(8771959-8772026)
chr5 (11-86)||(19259587-19259662)
chr5 (16-86)||(41184216-41184285)
chr5 (16-89)||(43148961-43149034)
chr5 (17-89)||(7886712-7886783)
chr5 (16-72)||(42580122-42580178)
chr5 (17-84)||(20257473-20257540)
chr5 (16-89)||(4954226-4954299)
chr5 (22-83)||(15571147-15571208)
chr5 (16-88)||(2057607-2057684)
chr5 (35-84)||(43261649-43261700)
chr5 (35-89)||(28235842-28235896)
chr5 (40-89)||(14726250-14726299)
chr5 (16-86)||(37483281-37483347)
chr5 (40-89)||(38007607-38007656)
[»] chr4 (38 HSPs)
chr4 (16-89)||(9528649-9528722)
chr4 (16-89)||(20569501-20569574)
chr4 (16-89)||(25274127-25274200)
chr4 (17-89)||(9284156-9284228)
chr4 (15-89)||(10359321-10359395)
chr4 (16-86)||(53616425-53616495)
chr4 (16-89)||(2115360-2115433)
chr4 (16-89)||(51318229-51318302)
chr4 (17-89)||(38706482-38706554)
chr4 (19-83)||(50766290-50766354)
chr4 (11-89)||(49680769-49680847)
chr4 (16-89)||(4644102-4644175)
chr4 (16-89)||(34024210-34024283)
chr4 (16-89)||(44947656-44947729)
chr4 (16-84)||(45227818-45227886)
chr4 (16-89)||(10389526-10389599)
chr4 (16-87)||(52097690-52097761)
chr4 (16-86)||(1532152-1532222)
chr4 (16-86)||(9645299-9645369)
chr4 (16-89)||(3335936-3336009)
chr4 (16-89)||(43444636-43444709)
chr4 (16-86)||(47417906-47417972)
chr4 (18-89)||(12265707-12265778)
chr4 (21-89)||(37188371-37188435)
chr4 (16-86)||(43153793-43153862)
chr4 (16-86)||(56199340-56199410)
chr4 (16-85)||(868407-868476)
chr4 (23-84)||(6973061-6973122)
chr4 (15-86)||(31381491-31381562)
chr4 (16-78)||(29966570-29966632)
chr4 (16-52)||(21090386-21090422)
chr4 (13-89)||(47320202-47320280)
chr4 (17-83)||(46990909-46990975)
chr4 (40-89)||(13634386-13634435)
chr4 (16-73)||(18138705-18138762)
chr4 (16-73)||(49125918-49125975)
chr4 (16-49)||(49410467-49410500)
chr4 (17-86)||(19896416-19896487)
[»] chr3 (30 HSPs)
chr3 (16-89)||(25162665-25162738)
chr3 (16-86)||(32607698-32607768)
chr3 (16-89)||(4178794-4178867)
chr3 (16-89)||(36906351-36906424)
chr3 (16-86)||(50611193-50611263)
chr3 (16-89)||(12116327-12116400)
chr3 (16-89)||(17238034-17238107)
chr3 (16-89)||(25631298-25631371)
chr3 (16-89)||(35498972-35499045)
chr3 (16-86)||(3848694-3848764)
chr3 (16-86)||(44907174-44907244)
chr3 (16-89)||(2342677-2342750)
chr3 (16-84)||(38440368-38440436)
chr3 (16-89)||(38854811-38854881)
chr3 (11-89)||(22803254-22803332)
chr3 (16-86)||(29503690-29503760)
chr3 (16-86)||(46934868-46934938)
chr3 (17-89)||(51202036-51202108)
chr3 (16-86)||(37169458-37169528)
chr3 (17-86)||(24396291-24396360)
chr3 (13-70)||(31794294-31794351)
chr3 (16-81)||(49552004-49552069)
chr3 (16-72)||(30648508-30648564)
chr3 (16-89)||(53807648-53807723)
chr3 (40-89)||(21533598-21533647)
chr3 (17-86)||(46178798-46178867)
chr3 (40-89)||(47041837-47041886)
chr3 (16-89)||(628713-628788)
chr3 (17-89)||(6823396-6823468)
chr3 (16-84)||(39917176-39917243)
[»] chr2 (36 HSPs)
chr2 (16-89)||(20046854-20046927)
chr2 (16-89)||(36234234-36234307)
chr2 (16-89)||(4193073-4193146)
chr2 (16-89)||(9986114-9986187)
chr2 (16-89)||(22421964-22422037)
chr2 (16-89)||(27248923-27248996)
chr2 (16-86)||(4228359-4228429)
chr2 (16-86)||(21570183-21570253)
chr2 (11-89)||(41431259-41431337)
chr2 (16-89)||(3725416-3725489)
chr2 (16-89)||(8806102-8806175)
chr2 (16-89)||(34600450-34600523)
chr2 (13-89)||(7015483-7015559)
chr2 (17-89)||(31580427-31580499)
chr2 (16-84)||(45128428-45128496)
chr2 (17-84)||(27949663-27949730)
chr2 (18-89)||(33228760-33228831)
chr2 (16-89)||(83953-84026)
chr2 (16-89)||(2808245-2808318)
chr2 (16-89)||(8971400-8971473)
chr2 (24-89)||(25087279-25087344)
chr2 (24-89)||(38575258-38575323)
chr2 (16-84)||(30420905-30420973)
chr2 (17-89)||(40625829-40625901)
chr2 (18-89)||(21132070-21132141)
chr2 (17-89)||(9374335-9374407)
chr2 (23-86)||(3268610-3268673)
chr2 (16-83)||(7558688-7558755)
chr2 (13-87)||(12236832-12236906)
chr2 (16-89)||(6174052-6174124)
chr2 (41-89)||(32913489-32913537)
chr2 (35-89)||(26025268-26025322)
chr2 (40-89)||(1415818-1415867)
chr2 (55-89)||(14955816-14955850)
chr2 (44-89)||(32678895-32678940)
chr2 (40-89)||(33923966-33924015)
[»] scaffold0146 (1 HSPs)
scaffold0146 (16-89)||(16092-16165)
[»] scaffold0443 (1 HSPs)
scaffold0443 (18-78)||(4439-4499)
[»] scaffold0022 (1 HSPs)
scaffold0022 (17-86)||(83212-83280)
[»] scaffold0003 (1 HSPs)
scaffold0003 (11-86)||(361574-361649)
[»] scaffold0014 (1 HSPs)
scaffold0014 (16-86)||(201148-201218)
[»] scaffold0311 (1 HSPs)
scaffold0311 (16-82)||(8923-8989)


Alignment Details
Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 42066912 - 42066834
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  42066912 ttattctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 42066834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 26492598 - 26492670
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  26492598 tttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 26492670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 86
Target Start/End: Original strand, 34773938 - 34774013
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||| |||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  34773938 ttatcctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgt 34774013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 45198878 - 45198808
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  45198878 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgt 45198808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 1485101 - 1485030
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtc 87  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||    
T  1485101 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtc 1485030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 32684900 - 32684970
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||| ||||| ||||| ||| |||||||||||||||||||||||    
T  32684900 ctttacgtttttagcggtgttgaatgatgtagtctctcgatttgaatgaatgaatatcattttgtttttgt 32684970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 22927715 - 22927642
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| ||||| ||||    
T  22927715 ctttacatttttagcggtgttgaatgatgtaatctctcgatttgaattaatgaatatcattttatttttttcaa 22927642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 46822247 - 46822320
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||| ||| ||||||||||||||||||||||    
T  46822247 ctttacgtttttagtggtgttgaatgatgtaatctctcgatttgaatgaattaatatcattttgtttttgtcaa 46822320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 20116814 - 20116886
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| | |||||||||||||||| ||||| ||| |||||||||||||||| |||||||||    
T  20116814 tttacgtttttagcggtgtggaatgatgtaatctctcgatttgaatgaatgaatatcattttggttttgtcaa 20116886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 31235632 - 31235556
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||| ||||||||||||||| || | ||||| ||| ||||||||||| ||||||||||||||    
T  31235632 attctttacgtttttagcgatattgaatgatgtaacctatcgatttgaataaatgaatatcagtttgtttttgtcaa 31235556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 35496018 - 35495950
Alignment:
Q  18 ttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||| | |||||||||||||||||||||    
T  35496018 ttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgattgaatatcattttgtttttgt 35495950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 2843086 - 2843015
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtc 87  Q
    |||||||||||||||||| ||||||||||||||||||  |||| ||| ||||||||||||||| ||||||||    
T  2843086 ctttacgtttttagcggtgttgaatgatgtaatctctcaatttgaatgaatgaatatcattttatttttgtc 2843015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 433536 - 433467
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttg 85  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||| |||| ||||||    
T  433536 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatctttttatttttg 433467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 23085753 - 23085826
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||| ||||| ||||| ||||||||||    
T  23085753 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatcaatataattttatttttgtcaa 23085826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 6559110 - 6559182
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||  || ||||||||| ||||||||  |||||||| ||||||||||||||||||||||||||    
T  6559110 tttacgtttttagtagtgttgaatgatataatctctcaatttaaatgaatgaatatcattttgtttttgtcaa 6559182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 23425217 - 23425145
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||| | |||||| |||||||||||  |||| ||| ||||||||||||||||||||||||||    
T  23425217 tttacgtttttagcgatgttgaataatgtaatctcttaatttgaatgaatgaatatcattttgtttttgtcaa 23425145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 7640619 - 7640560
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcatt 76  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||    
T  7640619 tttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcatt 7640560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 21266623 - 21266697
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctg--gatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| ||||||| ||||||||||   ||||| ||| ||||||||||||||||||||||||||    
T  21266623 tttacgtttttagcggtgttgaatggtgtaatctctctcgatttgaatgaatgaatatcattttgtttttgtcaa 21266697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 1448677 - 1448604
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||| ||||| |||||| ||||||||| |||| ||| ||||| ||| ||||||||||||||||||||||||||    
T  1448677 ctttaggttttcagcggtgttgaatgatataatatctcgatttgaatgaatgaatatcattttgtttttgtcaa 1448604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 14627735 - 14627670
Alignment:
Q  24 ttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||| |  ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  14627735 ttttagcggtgtcaaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 14627670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 26583942 - 26584015
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||| || | |||||||||||||||||  ||||| ||| ||||||||||||||| ||||||||||    
T  26583942 ctttacgtttttaacgatgttgaatgatgtaatctcacgatttgaatgaatgaatatcattttatttttgtcaa 26584015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 42311510 - 42311578
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    |||||||||| |||| || |||||| ||||||||||| ||||| ||| |||||||||||||||||||||    
T  42311510 ctttacgtttctagcagtgttgaataatgtaatctctcgatttgaataaatgaatatcattttgttttt 42311578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 35667076 - 35667009
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||||||||||| ||||||| | || ||||| ||||| ||| |||||||||||||||||||||    
T  35667076 tttacgtttttagcggtgttgaatggtatattctcttgatttgaatgaatgaatatcattttgttttt 35667009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 43369624 - 43369549
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||| ||||||||||| |||| |||||||||||||||||| |  |||||||| |||||||||| |||| |||||||    
T  43369624 ttatcctttacgttttcagcgatattgaatgatgtaatctatcaatttaaatgaatgaatatcgttttatttttgt 43369549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 46818243 - 46818176
Alignment:
Q  22 gtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||| |||| |||||||||||||||| | ||||| |||| ||||||||| |||||||||||||||    
T  46818243 gtttttaacggtgttgaatgatgtaatctatcgatttgaatttatgaatatcgttttgtttttgtcaa 46818176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 32521774 - 32521701
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||| ||||| |||| |||||||||||||||  | ||||| ||| |||||||||| |||| ||||||||||    
T  32521774 ctttacgattttaacggtgttgaatgatgtaatccatcgatttgaatgaatgaatatcgttttatttttgtcaa 32521701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 46339286 - 46339347
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattt 77  Q
    ||||||||||||| | || |||||||||||||||||| ||||| ||| || |||||||||||    
T  46339286 ctttacgtttttaacagtgttgaatgatgtaatctcttgatttgaatgaaagaatatcattt 46339347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 12502068 - 12502024
Alignment:
Q  45 taatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||    
T  12502068 taatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 12502024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 89
Target Start/End: Complemental strand, 12527702 - 12527658
Alignment:
Q  45 taatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||| ||||| ||| ||||||||||||||||||||||||||    
T  12527702 taatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 12527658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 23786808 - 23786880
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||| || ||||||||||||||||||  | || ||| |||||||||  |||| ||||||||||    
T  23786808 tttacgtttttagctgtgttgaatgatgtaatctctctaattgaatgaatgaatatatttttatttttgtcaa 23786880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 19560228 - 19560298
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||| |||||| || | || ||| ||| ||||||| ||||||||| ||||||||||||||| |||||||    
T  19560228 ctttacttttttaacgatgttaaataatgcaatctctcgatttaaatgaatgaatatcattttatttttgt 19560298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 84
Target Start/End: Original strand, 37849066 - 37849139
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||||| ||||||||||| |||||  | ||||| | | ||||| ||| ||||||||||||||| |||||    
T  37849066 ttattctttacatttttagcggtgttgaaataagtaatttatcgatttgaatgaatgaatatcattttattttt 37849139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 48
Target Start/End: Original strand, 48208166 - 48208198
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaat 48  Q
    |||||||||||||||||| ||||||||||||||    
T  48208166 ctttacgtttttagcggtgttgaatgatgtaat 48208198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 30879308 - 30879384
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  30879308 attctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 30879384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 50165944 - 50165871
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  50165944 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttaaatgaatgaatatcattttatttttgtcaa 50165871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 31837065 - 31837143
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| |||||| ||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||    
T  31837065 ttatcctttacatttttagcggtgttgaatgatataatctctcgatttaaatgaatgaatatcattttgtttttgtcaa 31837143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 5324404 - 5324331
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| | |||||||||||||||||| ||||||||| |||||||| |||||||||||||||||    
T  5324404 ctttacgtttttagcgatgttgaatgatgtaatctctcgatttaaatgaatgaataacattttgtttttgtcaa 5324331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 9687050 - 9686977
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||| ||| ||||| ||| ||||||||||||||||||||||||||    
T  9687050 ctttacgtttttagcggtgttgaatgatgtaatatctcgatttgaatgaatgaatatcattttgtttttgtcaa 9686977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 51868490 - 51868417
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  51868490 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 51868417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 19715740 - 19715669
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtc 87  Q
    |||||||||||||||||| ||||||||||||||||||  |||||||| ||||||||||||||| ||||||||    
T  19715740 ctttacgtttttagcggtgttgaatgatgtaatctctcaatttaaatgaatgaatatcattttatttttgtc 19715669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 35584460 - 35584398
Alignment:
Q  24 ttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  35584460 ttttagcggtattgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgt 35584398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 11454173 - 11454246
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||| ||||||||||| ||||||||||    
T  11454173 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaataaatatcattttatttttgtcaa 11454246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 20266538 - 20266611
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||| ||| |||||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  20266538 ctttacgtttttagtggtgttgaataatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 20266611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 27914952 - 27914879
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||||||||| |||||||||||||| ||| ||||| ||| ||||||||||||||||||||||||||    
T  27914952 ctttacatttttagcggtgttgaatgatgtaatatcttgatttgaatgaatgaatatcattttgtttttgtcaa 27914879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 30818209 - 30818136
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||||||||| |||||||||||||| ||| ||||| |||||||||||||| |||||||||||||||    
T  30818209 ctttacatttttagcggtgttgaatgatgtaatttcttgatttgaattaatgaatatctttttgtttttgtcaa 30818136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 34519364 - 34519437
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||| || ||||||||||| || ||||| ||| ||||||||||||||||||||||||||    
T  34519364 ctttacgtttttagcggtaatggatgatgtaatccctcgatttgaatgaatgaatatcattttgtttttgtcaa 34519437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 25406128 - 25406056
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| |||||||||||||| ||| ||||| ||| ||||||||||||||| ||||||||||    
T  25406128 tttacgtttttagcggtgttgaatgatgtaatatctcgatttgaatgaatgaatatcattttatttttgtcaa 25406056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 33291262 - 33291190
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||  ||| |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  33291262 tttacgtttttattggtgttgaatgatgtaatctctcgatttaaatgaatgaatatcattttatttttgtcaa 33291190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 7342958 - 7343028
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||| ||||||||||||| ||||| ||| ||||||||||||||| |||||||    
T  7342958 ctttacgtttttagcggtgttgagtgatgtaatctctcgatttgaatgaatgaatatcattttatttttgt 7343028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 9172726 - 9172799
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||||||||||||||||  |||| ||| |||||||||| |||| ||||||||||    
T  9172726 ctttacgtttttagcggtgttgaatgatgtaatctctcaatttgaatgaatgaatatctttttatttttgtcaa 9172799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 9180708 - 9180781
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||||||||||||||||  |||| ||| |||||||||| |||| ||||||||||    
T  9180708 ctttacgtttttagcggtgttgaatgatgtaatctctcaatttgaatgaatgaatatctttttatttttgtcaa 9180781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 11709552 - 11709479
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||| ||||    
T  11709552 ctttacgtttttagtggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttttcaa 11709479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 48217673 - 48217746
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| |||||||| || || ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  48217673 ctttacatttttagcagtgttaaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 48217746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 89
Target Start/End: Original strand, 3871636 - 3871716
Alignment:
Q  9 gattattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||| |||||||||||| || ||||||||||||||| ||||| ||| ||||||||||||||| ||||| ||||    
T  3871636 gattatcctttatgtttttagcggtgtttaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttttcaa 3871716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 45805674 - 45805606
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||||||| |||| |||||||||||||||||| ||||| ||| ||||||||||||||| |||||    
T  45805674 ctttacgtttttaacggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttattttt 45805606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 14545721 - 14545784
Alignment:
Q  26 ttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||||||||||||  |||| ||  ||||||||||||||||||||||||||    
T  14545721 ttagcggtattgaatgatgtaatctctctatttgaacgaatgaatatcattttgtttttgtcaa 14545784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 9919619 - 9919695
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| |||||| ||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  9919619 ttatcctttacatttttagcggt-ttgaatgatgtaatctctcgatttgaat-aatgaatatcattttatttttgtcaa 9919695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 19723549 - 19723622
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||||||| ||||| ||| ||||||    
T  19723549 ctttacgtttttagtggtgttgaatgatgtaatctctcgatttgaatgaatgaatataattttatttatgtcaa 19723622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 32676979 - 32676910
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||||||||||| ||| |||||||||||||||||| ||||| ||| ||| ||||||||||| |||||||    
T  32676979 tttacgtttttagtggtgttgaatgatgtaatctcttgatttgaatgaataaatatcattttatttttgt 32676910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 38520380 - 38520307
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||| | | |||||||||||||| |||  |||||||| ||||||||| ||||||||||||||||    
T  38520380 ctttacgtttttagtgatgttgaatgatgtaatttctcaatttaaatgaatgaatatgattttgtttttgtcaa 38520307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 50148606 - 50148679
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||||||| | |||||||||||||||||| ||||| ||| || |||||||||||| ||||||||||    
T  50148606 ctttacatttttagcgatgttgaatgatgtaatctctcgatttgaatgaaagaatatcattttatttttgtcaa 50148679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 51872099 - 51872172
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||| ||||||||||||  |||| ||| ||||||||||||| | ||||||||||    
T  51872099 ctttacgtttttagcggtgttgaaggatgtaatctctcaatttgaatgaatgaatatcattctatttttgtcaa 51872172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 41081548 - 41081476
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||  | |||||||||||| ||| | ||||| ||| ||||||||||||||||||||||||||    
T  41081548 tttacgtttttagcactgttgaatgatgtactctatcgatttgaatgaatgaatatcattttgtttttgtcaa 41081476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 45425910 - 45425839
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||| |||| |||||||||||||||  |||| ||| ||||||||| ||||||||||||||||    
T  45425910 tttacgtttttagcgatattaaatgatgtaatctctcaatttgaatgaatgaatat-attttgtttttgtcaa 45425839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 28035373 - 28035441
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttg 85  Q
    |||||||||||||||||| ||||||||||||||||||  | || ||| ||||||||||||||| ||||||    
T  28035373 ctttacgtttttagcggtgttgaatgatgtaatctct-caattgaatgaatgaatatcattttatttttg 28035441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 33817013 - 33816940
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||| ||||||||| ||||||||||||| ||| | | ||||| ||| |||||| |||||||||||||||||||    
T  33817013 ctttatgtttttagcagtattgaatgatgaaatattttgatttgaatgaatgaagatcattttgtttttgtcaa 33816940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 33876483 - 33876410
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||| ||||||||| ||||||||||||| ||| | | ||||| ||| |||||| |||||||||||||||||||    
T  33876483 ctttatgtttttagcagtattgaatgatgaaatattttgatttgaatgaatgaagatcattttgtttttgtcaa 33876410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 50271983 - 50271912
Alignment:
Q  18 ttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| ||||||||||| |||||||||||||| ||| ||||| ||| ||| ||||| ||||| ||||||||||    
T  50271983 ttacctttttagcggtgttgaatgatgtaatatctcgatttgaatgaataaatattattttatttttgtcaa 50271912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 39987654 - 39987724
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||| | |  |||| ||| |||||||||| ||||| ||||||    
T  39987654 ctttacgtttttagcggtgttgaatgatgtaatttatcaatttgaatgaatgaatatcgttttggttttgt 39987724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 5701495 - 5701531
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctct 52  Q
    |||||||||||||||||| ||||||||||||||||||    
T  5701495 ctttacgtttttagcggtgttgaatgatgtaatctct 5701531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 31130438 - 31130370
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    |||||| ||||||||| | ||||||||||||| || | ||||| ||| ||||||||||| |||||||||    
T  31130438 ctttacatttttagcgatgttgaatgatgtaacctgtcgatttgaatgaatgaatatcagtttgttttt 31130370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 40646911 - 40646971
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcatttt 78  Q
    |||||||||||||||||| |||||||   |||||||| ||||| ||| |||||||||||||||    
T  40646911 ctttacgtttttagcggtgttgaatg--ttaatctctcgatttgaatgaatgaatatcatttt 40646971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 14872893 - 14872939
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||||| ||| | ||||||||| |||||||||||||||||||||||    
T  14872893 tgatgtactctatcgatttaaatgaatgaatatcattttgtttttgt 14872939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 27872974 - 27873047
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaa-tatcattttgtttttgtcaa 89  Q
    |||||||||||| |  | |||| || ||||||||| | |||||||| |||||| ||||||||||||||||||||    
T  27872974 tttacgtttttaacattgttgattggtgtaatctccgaatttaaatgaatgaaatatcattttgtttttgtcaa 27873047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 34878116 - 34878067
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||| | ||||| ||| |||||||||| |||||||||||||||    
T  34878116 tgatgtaatctatcgatttgaatgaatgaatatcgttttgtttttgtcaa 34878067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 7875892 - 7875821
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  7875892 attctttacgtttttagcggtgttgaatgatgtaatctctcgatttaaatgaatgaatatcattttgttttt 7875821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 12653179 - 12653249
Alignment:
Q  19 tacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  12653179 tacgtttttagcggtgttgaatgatgtaatctctcgatttaaatgaatgaatatcattttgtttttgtcaa 12653249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 8497200 - 8497273
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  8497200 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 8497273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 7880950 - 7880879
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||    
T  7880950 attctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgttttt 7880879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 4984412 - 4984339
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  4984412 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 4984339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 17237131 - 17237058
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||| |||||||    
T  17237131 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgttgttgtcaa 17237058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 23947162 - 23947089
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||  |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  23947162 ctttacgtttttagcggcgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 23947089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 25064468 - 25064541
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  25064468 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 25064541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 12059618 - 12059548
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||| |||||||    
T  12059618 ctttacgtttttagcggtgttgaatgatataatctcttgatttaaatgaatgaatatcattttatttttgt 12059548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 8027963 - 8027890
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||| ||||||||||| ||||| ||| ||||||||||||||||||| ||||||    
T  8027963 ctttacgtttttagcggtgttgaataatgtaatctctcgatttgaatgaatgaatatcattttgtttctgtcaa 8027890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 16419391 - 16419463
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| ||||||||||||||||||  |||| ||| ||||||||||||||| ||||||||||    
T  16419391 tttacgtttttagcggtgttgaatgatgtaatctctcaatttgaataaatgaatatcattttatttttgtcaa 16419463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 33740423 - 33740355
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||| |||||||||||    
T  33740423 ctttacgtttttagcagtgttgaatgatgtaatctcttgatttaaatgaatgaatattattttgttttt 33740355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 85
Target Start/End: Original strand, 4468792 - 4468853
Alignment:
Q  24 ttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttg 85  Q
    |||||||||| ||||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  4468792 ttttagcggtgttgaatgatgtaaactctcgatttaaatgaatgaatatcattttgtttttg 4468853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 4088692 - 4088762
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| ||||||||  ||||||||  |||| ||| |||||||||||||||||||||||    
T  4088692 ctttacgtttttagcggtgttgaatgaaataatctctcaatttgaatgaatgaatatcattttgtttttgt 4088762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 7028094 - 7028160
Alignment:
Q  23 tttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| |||||| ||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||    
T  7028094 ttttcagcggtgttgaatgatataatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 7028160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Original strand, 17334986 - 17335052
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttt 83  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||| ||||| ||||    
T  17334986 tttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatgattttttttt 17335052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 35001822 - 35001892
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||| | |||||||||||||||| | ||||| ||| ||||||||||||||| |||||||    
T  35001822 ctttacgtttttagcgatgttgaatgatgtaatcttttgatttgaatgaatgaatatcattttatttttgt 35001892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 28634958 - 28634885
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| | ||||||||||||| || | ||||| ||| ||||||||||| ||||||||||||||    
T  28634958 ctttacgtttttagcgatgttgaatgatgtaacctatcgatttgaatgaatgaatatcagtttgtttttgtcaa 28634885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 34489433 - 34489501
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    |||||||||||||||||| |||||| ||||||||| | ||||| ||| ||| |||||||||||||||||    
T  34489433 ctttacgtttttagcggttttgaataatgtaatctatcgatttgaatgaataaatatcattttgttttt 34489501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 12168912 - 12168980
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||| |||||||||||| |||||||||||||||||  ||||| ||| ||||||||||||||| |||||||    
T  12168912 ctttaagtttttagcggtgttgaatgatgtaatctc--gatttgaatgaatgaatatcattttatttttgt 12168980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 20619662 - 20619721
Alignment:
Q  25 tttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||| ||||||||| |||||||| ||||||||| ||||||||||||||| |||||    
T  20619662 tttagcggtgttgaatgatataatctcttgatttaaatgaatgaatatcattttattttt 20619721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 3174057 - 3173984
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||| |||||||| |||||||||||||| | | ||||| ||| || |||||| ||||||||||||||||    
T  3174057 ctttacgttcttagcggtgttgaatgatgtaatttttcgatttgaatgaacgaatattattttgtttttgtcaa 3173984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 8196252 - 8196196
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatat 72  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| ||| |||||||||    
T  8196252 ctttacatttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatat 8196196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 606456 - 606505
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||| ||| | ||||| ||| ||||||||||||||||||||||||||    
T  606456 tgatgtactctatcgatttgaatgaatgaatatcattttgtttttgtcaa 606505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 16892660 - 16892619
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggattt 58  Q
    ||||||||||||| ||| |||||||||||||||||| |||||    
T  16892660 tttacgtttttagtggtgttgaatgatgtaatctctcgattt 16892619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 14906768 - 14906695
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  14906768 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 14906695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 9072954 - 9073030
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  9072954 attctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 9073030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 4809203 - 4809276
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  4809203 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 4809276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 29777458 - 29777531
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  29777458 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 29777531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 9498444 - 9498371
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||| ||| ||||| ||| ||||||||||||||| ||||||||||    
T  9498444 ctttacgtttttagcggtgttgaatgatgtaatatctcgatttgaatgaatgaatatcattttatttttgtcaa 9498371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 44099781 - 44099708
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||||||||||||||||  |||| ||| ||| ||||||||||||||||||||||    
T  44099781 ctttacgtttttagcggtgttgaatgatgtaatctctcaatttgaatgaataaatatcattttgtttttgtcaa 44099708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 11725919 - 11725993
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatca-ttttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||||||||||||||||  |||| ||| ||||||||||| |||||||||||||||    
T  11725919 ctttacgtttttagcggtgttgaatgatgtaatctctcaatttgaatgaatgaatatcatttttgtttttgtcaa 11725993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 32724331 - 32724253
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| |||||||||||||||||| |||||||||||||||||| |||| |||| ||||||||| ||||| ||||| ||||    
T  32724331 ttatcctttacgtttttagcggtgttgaatgatgtaatctctcgattcaaatgaatgaatataattttatttttatcaa 32724253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 33896325 - 33896398
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| ||| ||| ||||||||||| ||||||||||    
T  33896325 ctttacatttttagcggtgttgaatgatgtaatctctcgatttgaatgaataaatatcattttatttttgtcaa 33896398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 27746959 - 27746887
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||||||||||||||||   | ||||| ||| |||||||||| |||||||||||||||    
T  27746959 tttacgtttttagcggtattgaatgatgtaattcattgatttgaatgaatgaatatcgttttgtttttgtcaa 27746887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 34612040 - 34612116
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| | | || ||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  34612040 attctttacgtttttagtgatgttcaatgatgtaatctctcgattttaatgaatgaatatcattttatttttgtcaa 34612116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 11267247 - 11267309
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcatttt 78  Q
    |||||||||||||||||| | |||||||||||||||| ||||| ||| |||||||||||||||    
T  11267247 ctttacgtttttagcggtgtcgaatgatgtaatctctcgatttgaatgaatgaatatcatttt 11267309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 43889969 - 43889899
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||  | |||||| |||||||||||  |||||||| |||||||||||||||||||||||    
T  43889969 ctttacgtttttagcattgttgaataatgtaatctctcaatttaaatgaatgaatatcattttgtttttgt 43889899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 70
Target Start/End: Original strand, 2656110 - 2656163
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaat 70  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||| |||||||    
T  2656110 tttacgtttttagcggtgttgaatgatgtaatctctcgatttaaatgaatgaat 2656163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 19876437 - 19876506
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttg 85  Q
    |||||||||||||||||| ||||||||||||||||||  |||| ||| ||| ||||||||||| ||||||    
T  19876437 ctttacgtttttagcggtgttgaatgatgtaatctctcaatttgaatgaataaatatcattttatttttg 19876506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 23851338 - 23851269
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||| ||||||| ||| |||||||||||||||||| ||||| ||| ||||| |||||||||||||||||    
T  23851338 tttacttttttagtggtgttgaatgatgtaatctctcgatttgaatgaatgattatcattttgtttttgt 23851269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 9619202 - 9619132
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||| |||  |||| ||| ||||||||| ||||| |||||||    
T  9619202 ctttacgtttttagcggtgttgaatgatgtaatatctcaatttgaatgaatgaatataattttatttttgt 9619132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 11464410 - 11464456
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaat 62  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||    
T  11464410 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttaaat 11464456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 35580678 - 35580732
Alignment:
Q  35 ttgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||  | |||||| ||||||||||||||||||||||||||    
T  35580678 ttgaatgatgtaatctctcaacttaaatgaatgaatatcattttgtttttgtcaa 35580732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 44578269 - 44578339
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||| |||||||| | || |||||||||||||||||| ||||| ||| ||||||||||||||| |||||||    
T  44578269 ctttgcgtttttaacagtgttgaatgatgtaatctctcgatttgaataaatgaatatcattttatttttgt 44578339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 37565724 - 37565663
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattt 77  Q
    |||||||||||||| ||| |||||||||||||||||| |||||  || ||||||||||||||    
T  37565724 ctttacgtttttagtggtgttgaatgatgtaatctctcgatttgcatgaatgaatatcattt 37565663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 17949761 - 17949829
Alignment:
Q  20 acgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtca 88  Q
    |||||||||||||| ||||||||| |||| |||  |||| ||| |||||||||||||||| ||||||||    
T  17949761 acgtttttagcggtgttgaatgatataatttctcaatttgaatgaatgaatatcattttgattttgtca 17949829  T

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Target: chr8; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 42447875 - 42447804
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||  ||||||||||||||||||| | ||||| |||     ||||||||||||||||||||||    
T  42447875 attctttacgtttttagtagtattgaatgatgtaatctttagatttgaat-----aatatcattttgtttttgtcaa 42447804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 28240080 - 28240150
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||| | |||||||| |||| || | ||||| ||| ||||||||||| |||||||||||    
T  28240080 ctttacgtttttagcgatgttgaatgacgtaacctatcgatttgaatgaatgaatatcagtttgtttttgt 28240150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 43135423 - 43135356
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| ||||||     ||||||| ||||| ||| |||||||||||||||| |||||||||    
T  43135423 tttacgtttttagcggtgttgaat-----aatctctcgatttgaatgaatgaatatcattttgcttttgtcaa 43135356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 17427075 - 17427000
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||| |||||||||||||||| | ||||||  |||||||| |  ||| |||| |||||||||| ||||||||||||    
T  17427075 ttatcctttacgtttttagcgatgttgaatattgtaatctatcaattcaaatgaatgaatatcgttttgtttttgt 17427000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 43192192 - 43192133
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcat 75  Q
    ||||| |||||||||||| |||||||||||||||||| ||||| | | |||| |||||||    
T  43192192 ctttatgtttttagcggtgttgaatgatgtaatctctcgatttgactgaatggatatcat 43192133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 89
Target Start/End: Complemental strand, 30568158 - 30568108
Alignment:
Q  39 atgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||| |  |||| ||| ||||||||||||||||||||||||||    
T  30568158 atgatgtaatctatcaatttgaatgaatgaatatcattttgtttttgtcaa 30568108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 86
Target Start/End: Original strand, 33342680 - 33342742
Alignment:
Q  24 ttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||| |||||| ||||||||| | ||||| ||| ||||||||||  |||||||||||    
T  33342680 ttttagcggtgttgaataatgtaatctattgatttgaatgaatgaatatcggtttgtttttgt 33342742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 1236534 - 1236485
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||| ||| | ||||| ||| ||||||||||||||||||||||||||    
T  1236534 tgatgtattctatcgatttgaatgaatgaatatcattttgtttttgtcaa 1236485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 21060128 - 21060055
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  21060128 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 21060055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 30298440 - 30298516
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||||| ||||||||| || ||||| ||||||||| ||||||||||||||||||||||||||    
T  30298440 attctttacgtttttagcggtgttgaatgatatagtctctcgatttaaataaatgaatatcattttgtttttgtcaa 30298516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 7242018 - 7242091
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  7242018 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 7242091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 7247193 - 7247266
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  7247193 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 7247266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 34881951 - 34882024
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||| |||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  34881951 ctttatgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 34882024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 16981523 - 16981599
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||||| |||||||||||||| ||| ||||| ||| ||||||||||||||| ||||||||||    
T  16981523 attctttacgtttttagcggtgttgaatgatgtaatatctcgatttgaataaatgaatatcattttatttttgtcaa 16981599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 27752160 - 27752232
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||| |||||||||||    
T  27752160 tttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcatttcgtttttgtcaa 27752232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 14 - 89
Target Start/End: Complemental strand, 7150182 - 7150107
Alignment:
Q  14 ttctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  7150182 ttctttacgtttttagcggtgttgaatgatataatctctcgatttgaatgaatgaatatcattttatttttgtcaa 7150107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 18677309 - 18677242
Alignment:
Q  18 ttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttg 85  Q
    |||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||    
T  18677309 ttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttg 18677242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 781626 - 781692
Alignment:
Q  20 acgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  781626 acgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgt 781692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 3271247 - 3271177
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||| |||||||||||||||||    
T  3271247 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgattatcattttgtttttgt 3271177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 30299078 - 30299151
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||||||| |||| ||| ||||||||| ||||||||||||||| ||||||||||    
T  30299078 ctttacgtttttagcggtgttgaatgatttaatatctcgatttaaatgaatgaatatcattttatttttgtcaa 30299151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 10649877 - 10649949
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||| |||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  10649877 tttacgtttttaacggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 10649949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 27266703 - 27266631
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||| || ||||| |||||||||||||||||    
T  27266703 tttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaacgaataccattttgtttttgtcaa 27266631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 30371857 - 30371928
Alignment:
Q  18 ttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| || |||||||||||||||  |||| ||| ||||||||||||||||||||||||||    
T  30371857 ttacgtttttagcggtgtttaatgatgtaatctctctatttgaatgaatgaatatcattttgtttttgtcaa 30371928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 43008165 - 43008090
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||| |||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||||||| |||||||||||||    
T  43008165 ttatcctttacgtttttagtggtgttgaatgatgtaatctctcgatttgaatgaatgaatattattttgtttttgt 43008090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 19280782 - 19280709
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||| |||||||||||| |||||| ||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  19280782 ctttatgtttttagcggtgttgaataatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 19280709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 35475183 - 35475115
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    |||||||||||||||||| ||||||||||||||||||  |||| ||| ||||||||||||||| |||||    
T  35475183 ctttacgtttttagcggtgttgaatgatgtaatctctcaatttgaatgaatgaatatcattttattttt 35475115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 8772026 - 8771959
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttt 83  Q
    |||||||||||||| ||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||    
T  8772026 ctttacgtttttagtggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttt 8771959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 19259662 - 19259587
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||||||||||||||||||| | ||||| |||||||||||| ||||| |||  || |||||||||||||||||||    
T  19259662 ttattctttacgtttttagcgatgttgaacgatgtaatctctcgatttgaatggataaatatcattttgtttttgt 19259587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 41184285 - 41184216
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| || ||||||||||||||| ||||| ||| |||| ||||||||||||||||||    
T  41184285 ctttacgtttttagcggtgtt-aatgatgtaatctctcgatttgaatgaatgcatatcattttgtttttgt 41184216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 43148961 - 43149034
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||||||||| ||||||||| |||||||| ||||| ||| ||||||||||||| | ||||||||||    
T  43148961 ctttacatttttagcggtgttgaatgatataatctctcgatttgaatgaatgaatatcattgtatttttgtcaa 43149034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 7886783 - 7886712
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||| |||||||| ||||||||||||||||||  |||| ||| |||||||||| |||||||||||||||    
T  7886783 tttacgttcttagcggtgttgaatgatgtaatctct-catttgaatgaatgaatatcgttttgtttttgtcaa 7886712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 42580122 - 42580178
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatat 72  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||    
T  42580122 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatat 42580178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 84
Target Start/End: Complemental strand, 20257540 - 20257473
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||||||||| | ||||||||| |||||| | ||||| |||||||||||||| ||||||||||    
T  20257540 tttacgtttttagcgatgttgaatgatataatctatcgatttgaattaatgaatatcgttttgttttt 20257473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 4954226 - 4954299
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||||||||| ||||| |||||||||||| ||||| ||| ||| |||||||| || ||||||||||    
T  4954226 ctttacatttttagcggtgttgaacgatgtaatctctcgatttgaatgaataaatatcatcttatttttgtcaa 4954299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 83
Target Start/End: Original strand, 15571147 - 15571208
Alignment:
Q  22 gtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttt 83  Q
    |||||||| ||| |||||||||||||||| ||||||| ||| |||||||||| |||||||||    
T  15571147 gtttttagtggtgttgaatgatgtaatctatggatttgaatgaatgaatatcgttttgtttt 15571208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 88
Target Start/End: Complemental strand, 2057684 - 2057607
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctc-----tggatttaaattaatgaatatcattttgtttttgtca 88  Q
    |||||||||||||||||| |||||||||||| ||||     | ||||| ||| ||||||||||||||| |||||||||    
T  2057684 ctttacgtttttagcggtgttgaatgatgtattctcttaatttgatttgaatgaatgaatatcattttatttttgtca 2057607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 43261700 - 43261649
Alignment:
Q  35 ttgaatgatgtaatctctg--gatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||||||||||||   ||||||||| |||||||||||||||||||||    
T  43261700 ttgaatgatgtaatctctctcgatttaaatgaatgaatatcattttgttttt 43261649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 89
Target Start/End: Original strand, 28235842 - 28235896
Alignment:
Q  35 ttgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||| |||||||  ||||| || ||||||||||||||||||||| ||||    
T  28235842 ttgaatgatgcaatctctcaatttatatgaatgaatatcattttgtttttttcaa 28235896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 14726299 - 14726250
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||| | ||||| ||| |||||||||| |||||||||||||||    
T  14726299 tgatgtaatctatcgatttgaatgaatgaatatcgttttgtttttgtcaa 14726250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 37483281 - 37483347
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||| |||||||||| | |||||||||||||||| | ||||    | |||||||||||||||||||||||    
T  37483281 ctttatgtttttagcgatgttgaatgatgtaatctatcgatt----tgaatgaatatcattttgtttttgt 37483347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 38007607 - 38007656
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||| | ||||| ||| |||||||||| |||||||||||||||    
T  38007607 tgatgtaatctatcgatttgaatgaatgaatatcgttttgtttttgtcaa 38007656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 9528722 - 9528649
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  9528722 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 9528649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 20569501 - 20569574
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  20569501 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 20569574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 25274127 - 25274200
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  25274127 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 25274200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 9284156 - 9284228
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  9284156 tttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 9284228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 10359395 - 10359321
Alignment:
Q  15 tctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||| |||||||||||||||||| |||||  || ||||||||||||||||||||||||||    
T  10359395 tctttacgtttttagcggtgttgaatgatgtaatctctcgatttggatgaatgaatatcattttgtttttgtcaa 10359321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 53616495 - 53616425
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  53616495 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgt 53616425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 2115433 - 2115360
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||| |||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  2115433 ctttatgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 2115360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 51318229 - 51318302
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||| || |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  51318229 ctttacgtttttagcagtgttgaatgatgtaatctctcgatttaaatgaatgaatatcattttatttttgtcaa 51318302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 38706554 - 38706482
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||||    
T  38706554 tttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatgattttgtttttgtcaa 38706482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 50766354 - 50766290
Alignment:
Q  19 tacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttt 83  Q
    ||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||    
T  50766354 tacgtttttagcggtgttgaatgatgtaatctctcgatttaaatgaatgaatatcattttgtttt 50766290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 49680769 - 49680847
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| |||||||||||||||||| ||||||||||||| |||| ||||||||| ||||||||| ||||| ||||||||||    
T  49680769 ttatcctttacgtttttagcggtgttgaatgatgtaacctctcgatttaaatgaatgaatattattttatttttgtcaa 49680847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 4644102 - 4644175
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| | |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  4644102 ctttacgtttttagcgatgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 4644175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 34024283 - 34024210
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||||| |||||||||| ||||| ||| |||||||||||||||| |||||||||    
T  34024283 ctttacgtttttagcggtgttgaatggtgtaatctctcgatttgaatgaatgaatatcattttgcttttgtcaa 34024210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 44947656 - 44947729
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||| ||||| ||||||||  ||||||||||    
T  44947656 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttaaatgaatgattatcatttcatttttgtcaa 44947729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 45227886 - 45227818
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| |||||    
T  45227886 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcatttttttttt 45227818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 10389599 - 10389526
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||| |||||||||||| ||||||| |||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  10389599 ctttatgtttttagcggtgttgaatggtgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 10389526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 87
Target Start/End: Complemental strand, 52097761 - 52097690
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtc 87  Q
    |||||||||||||||||||| |||||||||| ||| | ||||| ||| |||||||||| |||||||||||||    
T  52097761 ctttacgtttttagcggtatcgaatgatgtactctgttgatttgaatgaatgaatatcgttttgtttttgtc 52097690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 1532152 - 1532222
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||| |||||||||||| |||||||| ||||||||| ||||| ||| ||||||||||||||| |||||||    
T  1532152 ctttatgtttttagcggtgttgaatgacgtaatctctcgatttgaatgaatgaatatcattttatttttgt 1532222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 9645369 - 9645299
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||| ||||| |||||||||||||||||| ||||| ||| ||| ||||| |||||||||||||    
T  9645369 ctttacgttttttgcggtgttgaatgatgtaatctctcgatttgaatgaataaatattattttgtttttgt 9645299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 3336009 - 3335936
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||| ||| | ||||| ||| |||||||||  |||||||||||||||    
T  3336009 ctttacgtttttagcggtgttgaatgatgtactctattgatttgaatgaatgaatattgttttgtttttgtcaa 3335936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 43444636 - 43444709
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||| ||| |||| ||||||||||||||||||  |||| ||| ||||||||||||||| ||||||||||    
T  43444636 ctttacgttcttaacggtgttgaatgatgtaatctctcaatttgaatgaatgaatatcattttatttttgtcaa 43444709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 47417906 - 47417972
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||||||| ||||    | |||||||||||||||||||||||    
T  47417906 ctttacgtttttagcggtgttgaatgatgtaatctctcgatt----tgaatgaatatcattttgtttttgt 47417972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 12265707 - 12265778
Alignment:
Q  18 ttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||| | ||||||||||||| || | ||||| ||| ||||||||||| ||||||||||||||    
T  12265707 ttacgtttttagcgatgttgaatgatgtaacctatcgatttgaatgaatgaatatcagtttgtttttgtcaa 12265778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 37188435 - 37188371
Alignment:
Q  21 cgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||| |||||||||||||||||| ||||    | ||||||||||||||||||||||||||    
T  37188435 cgtttttagcggtgttgaatgatgtaatctctcgatt----tgaatgaatatcattttgtttttgtcaa 37188371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 43153862 - 43153793
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||| |||||||||||| ||||||| ||||| ||| ||| ||||||| |||||||||||    
T  43153862 ctttacgtttttagcgatattgaatgatgcaatctctcgatttgaatgaataaatatca-tttgtttttgt 43153793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 56199340 - 56199410
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||||||||||||| || ||||||||||| |||||| ||||| ||| |||||||| |||||| |||||||    
T  56199340 ctttacgtttttagcagtgttgaatgatgtgatctctcgatttgaatgaatgaataccattttatttttgt 56199410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 868407 - 868476
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttg 85  Q
    ||||| |||||||||||| || |||||| |||||||| ||||||||  ||||||||||||||| ||||||    
T  868407 ctttatgtttttagcggtgttaaatgatataatctctcgatttaaacgaatgaatatcattttatttttg 868476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 6973061 - 6973122
Alignment:
Q  23 tttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    |||||| |||| ||||||||||||| ||||  |||||||| |||||||||||||||||||||    
T  6973061 tttttaacggtgttgaatgatgtaacctctcaatttaaatgaatgaatatcattttgttttt 6973122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 31381562 - 31381491
Alignment:
Q  15 tctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||||||||||||||| | |||||||||||||||||| ||||| ||| || |||||  ||||| |||||||    
T  31381562 tctttacgtttttagcgatgttgaatgatgtaatctctcgatttgaatgaacgaataagattttatttttgt 31381491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 29966570 - 29966632
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcatttt 78  Q
    ||||||||||||| || | |||||||||||||| ||| ||||||||| ||||||||| |||||    
T  29966570 ctttacgtttttaacgatgttgaatgatgtaatttcttgatttaaatgaatgaatattatttt 29966632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 52
Target Start/End: Original strand, 21090386 - 21090422
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctct 52  Q
    |||||||||||||||||| ||||||||||||||||||    
T  21090386 ctttacgtttttagcggtgttgaatgatgtaatctct 21090422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 47320280 - 47320202
Alignment:
Q  13 attctttacgtttttagcggtattgaat--gatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||| | |||| |  |||||| ||| | ||||| ||| ||||||||| ||||||||||||||||    
T  47320280 attctttacgtttttagcgatcttgattctgatgtattctatcgatttgaatgaatgaatataattttgtttttgtcaa 47320202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 46990975 - 46990909
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttt 83  Q
    ||||||||||||| ||  |||||||||||| ||| | ||||| ||| ||||||||||||||| ||||    
T  46990975 tttacgtttttagtggcgttgaatgatgtactctatcgatttgaatgaatgaatatcattttttttt 46990909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 13634386 - 13634435
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||| ||| | ||||| ||| ||||||||||||||||||||||||||    
T  13634386 tgatgtactctatcgatttgaatgaatgaatatcattttgtttttgtcaa 13634435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 18138762 - 18138705
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatc 73  Q
    |||||||||||||||||| |||||||||||| | | | ||||| ||| ||||||||||    
T  18138762 ctttacgtttttagcggtgttgaatgatgtactttattgatttgaatgaatgaatatc 18138705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 49125975 - 49125918
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatc 73  Q
    |||||||||||||||||| |||||||||||| | | | ||||| ||| ||||||||||    
T  49125975 ctttacgtttttagcggtgttgaatgatgtactttattgatttgaatgaatgaatatc 49125918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 49410467 - 49410500
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatc 49  Q
    |||||||||||||||||| |||||||||||||||    
T  49410467 ctttacgtttttagcggtgttgaatgatgtaatc 49410500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 19896487 - 19896416
Alignment:
Q  17 tttacgtttttagcggtattga--atgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||| || | ||||  |||||||| ||| |  |||||||| |||||||||||||||||||||||    
T  19896487 tttacgtttttaacgatgttgattatgatgtattctattaatttaaatgaatgaatatcattttgtttttgt 19896416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 25162665 - 25162738
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  25162665 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 25162738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 32607698 - 32607768
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  32607698 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgt 32607768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 4178794 - 4178867
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||| || |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  4178794 ctttacgtttttagcagtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 4178867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 36906351 - 36906424
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  36906351 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 36906424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 50611263 - 50611193
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||| ||| ||||| ||| |||||||||||||||||||||||    
T  50611263 ctttacgtttttagcggtgttgaatgatgtaatatctcgatttgaatgaatgaatatcattttgtttttgt 50611193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 12116327 - 12116400
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| | |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  12116327 ctttacgtttttagcgatgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 12116400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 17238034 - 17238107
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||| |||  |||| ||| ||||||||||||||||||||||||||    
T  17238034 ctttacgtttttagcggtgttgaatgatgtaatatctcaatttgaatgaatgaatatcattttgtttttgtcaa 17238107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 25631371 - 25631298
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  25631371 ctttacatttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 25631298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 35499045 - 35498972
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||||||||||||| || ||||| ||| ||||||||||||||| ||||||||||    
T  35499045 ctttacgtttttagcggtgttgaatgatgtaatccctcgatttgaatgaatgaatatcattttatttttgtcaa 35498972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 3848764 - 3848694
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| |||||||||| |||| |||||||    
T  3848764 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatctttttatttttgt 3848694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 44907244 - 44907174
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||| | |||||||||||||| ||| ||||| ||| |||||||||||||||||||||||    
T  44907244 ctttacgtttttagcgttgttgaatgatgtaatatctcgatttgaatgaatgaatatcattttgtttttgt 44907174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 2342677 - 2342750
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||| ||||||||| || || |||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  2342677 ctttacgtctttagcggtgttaaacgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 2342750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 38440436 - 38440368
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    |||||||||||||||||| |||||||||||||||| | ||||| ||| ||||||||||||||| |||||    
T  38440436 ctttacgtttttagcggtgttgaatgatgtaatctttcgatttgaatgaatgaatatcattttattttt 38440368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 38854881 - 38854811
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||||   |||||| ||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  38854881 ctttacgtttttagcggt---gaatgacgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 38854811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 22803254 - 22803332
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| |||||||||||||||| | ||||||||||||| || | ||||||||| ||||||||||| ||| ||||||||||    
T  22803254 ttatcctttacgtttttagcgatgttgaatgatgtaacctatcgatttaaatgaatgaatatcaatttatttttgtcaa 22803332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 29503690 - 29503760
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||| ||||||||||| |||||| ||||||||| | ||||| ||| |||||||||||||||||||||||    
T  29503690 ctttacatttttagcggtgttgaataatgtaatctattgatttgaatgaatgaatatcattttgtttttgt 29503760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 46934868 - 46934938
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||| | |||||||||| ||||||| ||||| ||| ||||||||||||||| |||||||    
T  46934868 ctttacgtttttagcgatgttgaatgatgcaatctctcgatttgaatgaatgaatatcattttatttttgt 46934938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 51202108 - 51202036
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||  | ||| ||||||||||| ||||| ||| ||| ||||||||||||||||||||||    
T  51202108 tttacgtttttagcggtgataaataatgtaatctctcgatttgaatgaataaatatcattttgtttttgtcaa 51202036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 37169458 - 37169528
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||||||||| |||||||||||||||| | ||||| ||| || |||| || ||||||||||||    
T  37169458 ctttacgtttttagcggtgttgaatgatgtaatctattgatttgaatgaaagaatgtcgttttgtttttgt 37169528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 24396360 - 24396291
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||| |||||||||  |||||||||||||| ||| |  |||| |||||||||||||| ||||||||||||    
T  24396360 tttaagtttttagcaatattgaatgatgtactctatcaatttgaattaatgaatatcgttttgtttttgt 24396291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 70
Target Start/End: Original strand, 31794294 - 31794351
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaat 70  Q
    ||||||||||||||||||| |||||||| ||||| ||| | ||||||||| |||||||    
T  31794294 attctttacgtttttagcgatattgaataatgtattctatcgatttaaatgaatgaat 31794351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 49552069 - 49552004
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtt 81  Q
    ||||||||||||||| || |||||||||||||| |   ||||| ||| ||||||||||||||||||    
T  49552069 ctttacgtttttagcagtgttgaatgatgtaattttatgatttgaatgaatgaatatcattttgtt 49552004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 30648564 - 30648508
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatat 72  Q
    ||||| |||||||||||| |||||| ||||||||||| ||||| ||| |||||||||    
T  30648564 ctttatgtttttagcggtgttgaattatgtaatctctcgatttgaatgaatgaatat 30648508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 53807723 - 53807648
Alignment:
Q  16 ctttacgtttttagcggtattgaat--gatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| | |||| |  |||||| ||| | ||||| ||| ||||||||||||||||||||||||||    
T  53807723 ctttacgtttttagcgatcttgattctgatgtattctattgattttaatgaatgaatatcattttgtttttgtcaa 53807648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 21533647 - 21533598
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||| ||| | ||||| ||| ||||||||||||||||||||||||||    
T  21533647 tgatgtactctatcgatttgaatgaatgaatatcattttgtttttgtcaa 21533598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 46178798 - 46178867
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||||||||| |||| ||||||||| |||| | | ||||| ||| |||||| ||| ||||||||||||    
T  46178798 tttacgtttttaacggtgttgaatgatataatatatcgatttgaatgaatgaaaatcgttttgtttttgt 46178867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Complemental strand, 47041886 - 47041837
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||| |  |||| ||| ||||||||||||||||||||||||||    
T  47041886 tgatgtaatctatctatttgaatgaatgaatatcattttgtttttgtcaa 47041837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 628788 - 628713
Alignment:
Q  16 ctttacgtttttagcggtattgaat--gatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| | |||| |  |||||| ||| |  |||| ||| ||||||||||||||||||||||||||    
T  628788 ctttacgtttttagcgatcttgattttgatgtattctatcaatttgaatgaatgaatatcattttgtttttgtcaa 628713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 6823468 - 6823396
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| |||||||||| | || ||| ||||||||| |  |||||||| ||||||||||||||| ||| ||||||    
T  6823468 tttaggtttttagcgatgtttaataatgtaatctatcaatttaaatgaatgaatatcattttatttgtgtcaa 6823396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 39917243 - 39917176
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    |||||||||||||| ||| ||||||||| ||||||||  |||| ||| || |||||||||||| |||||    
T  39917243 ctttacgtttttagaggtgttgaatgat-taatctctcaattttaatgaaagaatatcattttattttt 39917176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 20046927 - 20046854
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  20046927 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttaaatgaatgaatatcattttatttttgtcaa 20046854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 36234234 - 36234307
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  36234234 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 36234307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 4193073 - 4193146
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||  |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  4193073 ctttacgtttttagcggcgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 4193146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 9986187 - 9986114
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||||||| |||||  || ||||||||||||||||||||||||||    
T  9986187 ctttacgtttttagcggtgttgaatgatgtaatctctcgatttggatgaatgaatatcattttgtttttgtcaa 9986114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 22421964 - 22422037
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||||||||||||  |||||||| ||||| ||| ||||||||||||||||||||||||||    
T  22421964 ctttacgtttttagcggtattgaatgacataatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 22422037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 27248996 - 27248923
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||||||| |||||||| ||||| ||| ||||||||||||||||||||||||||    
T  27248996 ctttacgtttttagcggtgttgaatgatataatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 27248923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 4228359 - 4228429
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  4228359 ctttacatttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgt 4228429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 21570253 - 21570183
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||| |||||||||||| |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  21570253 ctttatgtttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgt 21570183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 41431259 - 41431337
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| |||||||||||||||||| |||||| ||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  41431259 ttatcctttacgtttttagcggtgttgaataatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 41431337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 3725416 - 3725489
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||| ||| || ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  3725416 ctttacgtttttagtggtgttaaatgatgtaatctctcgatttgaataaatgaatatcattttgtttttgtcaa 3725489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 8806102 - 8806175
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| | |||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  8806102 ctttacgtttttagcgatgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 8806175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 34600450 - 34600523
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| ||||| |||||||||||| ||||| ||| |||| |||||||||||||||||||||    
T  34600450 ctttacgtttttagcggtgttgaacgatgtaatctctcgatttgaatgaatggatatcattttgtttttgtcaa 34600523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 7015559 - 7015483
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||| ||||||||||||| || |||||||||||||||||| ||||| ||| ||| ||||||||||||||||||||||    
T  7015559 attcgttacgtttttagctgtgttgaatgatgtaatctctcgatttgaatgaataaatatcattttgtttttgtcaa 7015483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 31580499 - 31580427
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||||| |  ||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  31580499 tttacgtttttagcggtgtacaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 31580427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 45128428 - 45128496
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||| |||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  45128428 ctttatgtttttagcggtgttgaatgatgtaatctctcgatttgaattaatgaatatcattttattttt 45128496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 27949663 - 27949730
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    ||||||||||||||||| ||||||||| |||| ||| ||||||||| |||||||||||||||||||||    
T  27949663 tttacgtttttagcggtgttgaatgatataatatctcgatttaaatgaatgaatatcattttgttttt 27949730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 33228831 - 33228760
Alignment:
Q  18 ttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| ||||||||| |||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  33228831 ttacgtttttagcggtgttgaatgatataatctctcgatttgaatgaatgaatatcattttatttttgtcaa 33228760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 84026 - 83953
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||| ||| ||||| ||| |||||||| |||||| ||||||||||    
T  84026 ctttacgtttttagcggtgttgaatgatgtaatatctcgatttgaatgaatgaataccattttatttttgtcaa 83953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 2808318 - 2808245
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| | |||||||||  ||||||| ||||| ||| ||||||||||||||||||||||||||    
T  2808318 ctttacgtttttagcgatgttgaatgatacaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 2808245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 8971473 - 8971400
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| || |||||||| |||||||||||||||||| ||||| ||| |||| |||||||||||||||||||||    
T  8971473 ctttacattcttagcggtgttgaatgatgtaatctctcgatttgaatgaatggatatcattttgtttttgtcaa 8971400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 25087279 - 25087344
Alignment:
Q  24 ttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  25087279 ttttagtggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 25087344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 38575323 - 38575258
Alignment:
Q  24 ttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||||||||| ||||    
T  38575323 ttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgtttttatcaa 38575258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 30420905 - 30420973
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttttt 84  Q
    |||||| ||||||||||| |||||||||||||||||| ||||| ||| ||||||||||||||| |||||    
T  30420905 ctttacatttttagcggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttattttt 30420973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 40625901 - 40625829
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||||||| | |||||||||||||||||| ||||| |||  |||||||||||||||||||| ||||    
T  40625901 tttacgtttttagcgatgttgaatgatgtaatctctcgatttgaatggatgaatatcattttgtttttatcaa 40625829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 21132070 - 21132141
Alignment:
Q  18 ttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||| |||||||||||||| | | ||||| ||| |||||||||||||||| |||||||||    
T  21132070 ttacgtttttagcggtgttgaatgatgtaatttttcgatttgaatgaatgaatatcattttgattttgtcaa 21132141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 9374407 - 9374335
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||| || |||||||||||| ||| | ||||| ||| |||||||||| |||||||||||||||    
T  9374407 tttacgtttttagccgtgttgaatgatgtactctgtcgatttgaatgaatgaatatcgttttgtttttgtcaa 9374335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Complemental strand, 3268673 - 3268610
Alignment:
Q  23 tttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||||||||| ||||||||| |||||||| ||||| ||| ||||||||||||||| |||||||    
T  3268673 tttttagcggtgttgaatgatataatctctcgatttgaatgaatgaatatcattttatttttgt 3268610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 7558688 - 7558755
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttt 83  Q
    |||||||||||||| ||| || ||||||||||||||| ||||| ||| ||||||||||||||| ||||    
T  7558688 ctttacgtttttagtggtgttaaatgatgtaatctctcgatttgaatgaatgaatatcattttatttt 7558755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 12236906 - 12236832
Alignment:
Q  13 attctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtc 87  Q
    ||||||||| |||||||| ||  |||||||| ||||||||  |||||||| ||||||||||||||| ||||||||    
T  12236906 attctttacatttttagcagtgctgaatgatataatctctcaatttaaatgaatgaatatcattttatttttgtc 12236832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 6174052 - 6174124
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||| ||||||||||| ||||||||| |||||||| ||||| ||| ||||||||  ||||||||||||||||    
T  6174052 ctttacatttttagcggtgttgaatgatataatctctcgatttgaataaatgaata-aattttgtttttgtcaa 6174124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Original strand, 32913489 - 32913537
Alignment:
Q  41 gatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||| ||||| ||| ||||||||||||||||||||||||||    
T  32913489 gatgtaatctctcgatttgaatgaatgaatatcattttgtttttgtcaa 32913537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 26025322 - 26025268
Alignment:
Q  35 ttgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||| ||||||||  |||| ||| ||||||||||||||||||||||||||    
T  26025322 ttgaatgatataatctctcaatttgaatgaatgaatatcattttgtttttgtcaa 26025268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 1415818 - 1415867
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||| | ||||| ||| ||||||||||||||||||||||||||    
T  1415818 tgatgtaatctatcgatttgaatgaatgaatatcattttgtttttgtcaa 1415867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 89
Target Start/End: Original strand, 14955816 - 14955850
Alignment:
Q  55 atttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||| ||||||||||||||||||||||||||    
T  14955816 atttaaatgaatgaatatcattttgtttttgtcaa 14955850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 89
Target Start/End: Complemental strand, 32678940 - 32678895
Alignment:
Q  44 gtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  32678940 gtaatctctcgatttgaatgaatgaatatcattttatttttgtcaa 32678895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 33923966 - 33924015
Alignment:
Q  40 tgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    ||||||||||| | ||||| ||| |||||||||| |||||||||||||||    
T  33923966 tgatgtaatctatcgatttgaatgaatgaatatcgttttgtttttgtcaa 33924015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 16165 - 16092
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgtcaa 89  Q
    |||||||||||||||||| |||||||||||||| |||  |||| ||| ||||||||||||||||||||||||||    
T  16165 ctttacgtttttagcggtgttgaatgatgtaatatctcaatttgaatgaatgaatatcattttgtttttgtcaa 16092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 4439 - 4499
Alignment:
Q  18 ttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcatttt 78  Q
    |||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||    
T  4439 ttacgtttttagcggtgttgaatgatgtaatctcttgatttaaatgaatgaatatcatttt 4499  T

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Target: scaffold0022 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 83280 - 83212
Alignment:
Q  17 tttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    ||||||||||||||| | |||||||||||||||||| ||||| ||| |||||||||||||||||||||||    
T  83280 tttacgtttttagcgat-ttgaatgatgtaatctcttgatttgaatgaatgaatatcattttgtttttgt 83212  T

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Target: scaffold0003 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 11 - 86
Target Start/End: Complemental strand, 361649 - 361574
Alignment:
Q  11 ttattctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||| |||||||||||||||||| ||||||||||||||||||  || | ||| ||||||||||||||| |||||||    
T  361649 ttatcctttacgtttttagcggtgttgaatgatgtaatctctcaatatgaatgaatgaatatcattttatttttgt 361574  T

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Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 201218 - 201148
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgtttttgt 86  Q
    |||||| ||||||| ||| |||||||||||||||| | ||||| ||| |||||||||||||||||||||||    
T  201218 ctttacatttttagtggtgttgaatgatgtaatctatcgatttgaatgaatgaatatcattttgtttttgt 201148  T

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Target: scaffold0311 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 8923 - 8989
Alignment:
Q  16 ctttacgtttttagcggtattgaatgatgtaatctctggatttaaattaatgaatatcattttgttt 82  Q
    |||||| |||| | |||| |||||||||||||||||| ||||| ||| |||||||||||||||||||    
T  8923 ctttacattttaaacggtgttgaatgatgtaatctctcgatttgaatgaatgaatatcattttgttt 8989  T

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