View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6331_low_2 (Length: 684)
Name: NF6331_low_2
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 12 - 391
Target Start/End: Complemental strand, 183248 - 182869
Alignment:
| Q |
12 |
catcatcaatgagagaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183248 |
catcatcaatgagagaataagtgttgtcaaccatacccaactactctatagtcttcaccattaatacacaaccctcataattttcttagagaattaagta |
183149 |
T |
|
| Q |
112 |
ctacttgacaaaacataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgtttt |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183148 |
ctacttgacaaaacataaatccaaattagtctctataatacaatgatttatggactaatttatcccgaatatgaaaatgtcatagattaatttgtgtttt |
183049 |
T |
|
| Q |
212 |
atttattgttagagactgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaa |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
183048 |
atttattgttagagactgaattaaattgtatcttcactcattaatcaaatagatagtttgttaggattgcatacttttatatgaactgattggctataaa |
182949 |
T |
|
| Q |
312 |
atcaattaaatgatggtccattatatacctttcacatgagatcctgtttattactgttacaaaaatactcctatttaatc |
391 |
Q |
| |
|
||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
182948 |
atcaattaaataatggcccattatataactttcacatgagatcctgtttattactgttacaaaaatactcctatttaatc |
182869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 453 - 665
Target Start/End: Complemental strand, 182807 - 182591
Alignment:
| Q |
453 |
gcttagagatgcatatatactagttgtatt----gatagttgaatccaagaaaaggaaagaaagagttaagaagaacatacaaggacactaaagccagta |
548 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
182807 |
gcttagagatgcatatatactagttgtattcattgatagttgaatccaagaaaaggaaagaaagagttaagaagaacatacaaggacactaaagccagta |
182708 |
T |
|
| Q |
549 |
acttcagcaaaagacatggcaatggaaacaccagagaatgaaacaagtataccaagatgtccaaccatcataagagaaaccacttgaagaagatattgtg |
648 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
182707 |
acttcagcaaaagacatggcaatggaaacaccagagaatgaaacaagtataccaagatgtccaaccatcataagagaaaccacttgaagaagatattgtg |
182608 |
T |
|
| Q |
649 |
aaacagttacagctacc |
665 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
182607 |
aaacagttacagctacc |
182591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 176
Target Start/End: Original strand, 15962607 - 15962650
Alignment:
| Q |
133 |
caaattagtctctataatacaatgatttatggactaatttatcc |
176 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||||||||||||| |
|
|
| T |
15962607 |
caaattagtctctctaatacaatgagttaaggactaatttatcc |
15962650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University