View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6331_low_21 (Length: 252)
Name: NF6331_low_21
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_21 |
 | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 17 - 242
Target Start/End: Original strand, 105008 - 105233
Alignment:
| Q |
17 |
aagtaatactcttatttcacaggttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaa |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105008 |
aagtaatactcttatttcacaggttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaa |
105107 |
T |
|
| Q |
117 |
gaccatggatggcaagtttctgattgcaccgctgaaggtttgaaggtataggcaattaacaacataacttgttaataagctttctcaatgacaagtattg |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
105108 |
gaccatggatggcaagtttctgattgcaccgctgaaggtttgaaggtataggcaattaacaacataacttgttaataagctttctcaatgacaagtattg |
105207 |
T |
|
| Q |
217 |
aatgttaataaaggttaaactctctg |
242 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
105208 |
aatgttaataaaggttaaactctctg |
105233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 165643 - 165785
Alignment:
| Q |
22 |
atactcttatttcacaggttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagacca |
121 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
165643 |
atactcttatttcacaggttagggacaacccttctggagatttcaagagtatgtatcgtcatatttctaaaggctcgtggaccttctctgatcaagacca |
165742 |
T |
|
| Q |
122 |
tggatggcaagtttctgattgcaccgctgaaggtttgaaggta |
164 |
Q |
| |
|
||||||||| |||||||||||||||| ||||| ||||||||| |
|
|
| T |
165743 |
aggatggcaactttctgattgcaccgcagaaggattgaaggta |
165785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 20 - 164
Target Start/End: Complemental strand, 91767 - 91623
Alignment:
| Q |
20 |
taatactcttatttcacaggttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagac |
119 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
91767 |
taatactcttatttctcaggttagcgacaacccttctggagattttaagagtatgtatcgtcatatttctaaaggttcatggaccttctccgatcaagac |
91668 |
T |
|
| Q |
120 |
catggatggcaagtttctgattgcaccgctgaaggtttgaaggta |
164 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||||||||||||| |
|
|
| T |
91667 |
catggatggcaagtttctgatagtaccgcagaaggtttgaaggta |
91623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 22 - 164
Target Start/End: Original strand, 13053526 - 13053668
Alignment:
| Q |
22 |
atactcttatttcacaggttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagacca |
121 |
Q |
| |
|
||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
13053526 |
atacttttatttcacaggttagagacaacccttcaggagattttaagagtatgcatcgtcatatttctaaaggtgcgtggactttctccgatcaagacca |
13053625 |
T |
|
| Q |
122 |
tggatggcaagtttctgattgcaccgctgaaggtttgaaggta |
164 |
Q |
| |
|
||||||||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
13053626 |
tggatggcaagtttctgattgcaccgcagatggtctgaaggta |
13053668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 27 - 164
Target Start/End: Complemental strand, 12136810 - 12136673
Alignment:
| Q |
27 |
cttatttcacaggttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggat |
126 |
Q |
| |
|
|||||||| ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12136810 |
cttatttcttaggttcgagacaacccttcaggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggat |
12136711 |
T |
|
| Q |
127 |
ggcaagtttctgattgcaccgctgaaggtttgaaggta |
164 |
Q |
| |
|
|||| ||||||||||| || || ||||||||||||||| |
|
|
| T |
12136710 |
ggcaggtttctgattgtactgcagaaggtttgaaggta |
12136673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 5688583 - 5688467
Alignment:
| Q |
48 |
aacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctgattgcaccg |
147 |
Q |
| |
|
|||||||| ||||||||| |||| ||| | |||||||| || ||||| |||||||||||||| |||||||| ||||||||||| |||||||||||||| | |
|
|
| T |
5688583 |
aacccttcaggagattttgagagcatgtaccgtcatatctccaaagggtcatggaccttctctgatcaagatcatggatggcaggtttctgattgcactg |
5688484 |
T |
|
| Q |
148 |
ctgaaggtttgaaggta |
164 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
5688483 |
cagaaggtttaaaggta |
5688467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 5721321 - 5721205
Alignment:
| Q |
48 |
aacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtttctgattgcaccg |
147 |
Q |
| |
|
|||||||| ||||||||| |||| ||| | |||||||| || ||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
5721321 |
aacccttcaggagattttgagagcatgtaccgtcatatctccaaagggtcatggacattctctgatcaagatcatggatggcaggtttctgattgcaccg |
5721222 |
T |
|
| Q |
148 |
ctgaaggtttgaaggta |
164 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
5721221 |
cagaaggtttaaaggta |
5721205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 5668806 - 5668677
Alignment:
| Q |
35 |
acaggttacagagaacccttctggagattttaagagtatgcatcgtcatatttctaaaggctcatggaccttctccgatcaagaccatggatggcaagtt |
134 |
Q |
| |
|
|||||||| || |||||||| ||||||| | |||| ||| | |||||||| || ||||| |||||||||||||| |||||||| ||||||||| |||| |
|
|
| T |
5668806 |
acaggttagggacaacccttcaggagattatgagagcatgtaccgtcatatgtccaaagggtcatggaccttctctgatcaagatcatggatggtcagtt |
5668707 |
T |
|
| Q |
135 |
tctgattgcaccgctgaaggtttgaaggta |
164 |
Q |
| |
|
|| |||||||| || |||||||| |||||| |
|
|
| T |
5668706 |
tcagattgcactgcagaaggtttaaaggta |
5668677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University