View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_low_22 (Length: 251)
Name: NF6331_low_22
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_22 |
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| [»] chr3 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 9 - 251
Target Start/End: Complemental strand, 49233651 - 49233409
Alignment:
| Q |
9 |
gaagaatatgaagctgacaatccagatgcaaatttattgactatgtctaatgaaaaggcacttgaggtaactaaaatagcagataattttggatcagtca |
108 |
Q |
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| T |
49233651 |
gaagaaaatgaagctgacaatctagatgcaaacttattgactatgtctaatgaaaaggcacttgaggtaactaaaatagcagataattttggatcagtca |
49233552 |
T |
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| Q |
109 |
tttatatgtgagcaaaaattgtgatatttatacgagttcatggtcctttgcagaaccctgtaatcgagagtgcagattcaaccatttctgacaataggca |
208 |
Q |
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| T |
49233551 |
tttatatgtgagcaaaaattgtgatatttacacgagttcctggtcctttgcagaaccctgtaatcgagagtgcagattcaaccaagtctgacaataggca |
49233452 |
T |
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| Q |
209 |
gagtgataataaccaaaccgtcattgagaccaaccgtgtagca |
251 |
Q |
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| T |
49233451 |
gagtgataataaccaaaccgtcattgagactaaccgtgtagca |
49233409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 50862827 - 50863069
Alignment:
| Q |
9 |
gaagaatatgaagctgacaatccagatgcaaatttattgactatgtctaatgaaaaggcacttgaggtaactaaaatagcagataattttggatcagtca |
108 |
Q |
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|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| |||| ||||||| || |
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| T |
50862827 |
gaagaaaatgaagctgacaatccagatgcaaacttattgactatgtctaatgaaaatgcacttgaggtggctaaaatagcagatgattt-ggatcagaca |
50862925 |
T |
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| Q |
109 |
tttatatgtgagcaaaaattgtgatatttatacgagttcatggtcctttgcagaaccctgtaatcgagagtgcagattcaaccatttctgacaataggca |
208 |
Q |
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| T |
50862926 |
tttatatgtgcgctaaaattgtgatatttatacgagttcctggtcctttgcagaaccctataatcgagagtgcggattcaaccaagtctgacaacaggca |
50863025 |
T |
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| Q |
209 |
gagtgataataaccaaaccgtcattgagacca-accgtgtagca |
251 |
Q |
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| T |
50863026 |
gggtgataataaccaaaccgtcattgagactacaccgtgtagca |
50863069 |
T |
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