View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6331_low_25 (Length: 246)
Name: NF6331_low_25
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_25 |
 | |
|
| [»] scaffold0215 (1 HSPs) |
| | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 51 - 237
Target Start/End: Complemental strand, 50863295 - 50863109
Alignment:
| Q |
51 |
taaaataactgactgataagtgacataacatcacacacaatatgaatacaattgaaccaaaacggcgacaacgaaaataagaaaacagcagagacatagc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
50863295 |
taaaataactgactgataagtgacataacatcacacacaatacgaatacaattgaaccaaagcggcaacaacgaaaataagaaaacagcagacacatagc |
50863196 |
T |
|
| Q |
151 |
ttttcaaactaatccttctcaaccttattgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagcttt |
237 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50863195 |
ttttcaaactaatccttctcaaccttagtgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagcttt |
50863109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0215 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0215
Description:
Target: scaffold0215; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 85 - 236
Target Start/End: Complemental strand, 20686 - 20535
Alignment:
| Q |
85 |
acacaatatgaatacaattgaaccaaaacggcgacaacgaaaataagaaaacagcagagacatagcttttcaaactaatccttctcaaccttattgcatt |
184 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
20686 |
acacaatacaaatacaattgaaccaaaacggcaacaacgaaaataagaaaacagcagagacatagcttttcaaactaatccttctcaaccttagtgcact |
20587 |
T |
|
| Q |
185 |
tcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20586 |
tcactttccgtgttttgtaggttgagttatcccccaatacagttccaagctt |
20535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 179 - 246
Target Start/End: Original strand, 49233310 - 49233376
Alignment:
| Q |
179 |
tgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagctttggtagagcc |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49233310 |
tgcatttcactttccgtgttttgtaggttgagttatcccccaattcagttccaagc-ttggtagagcc |
49233376 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University