View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_low_26 (Length: 246)
Name: NF6331_low_26
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 33119508 - 33119747
Alignment:
| Q |
1 |
atgtacttgattgaaaaaagcgggagaaagaaactcgctttaataagtttgacaggagttgtaggatcgctaattcttcttaccgttgtttttcatcaga |
100 |
Q |
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| T |
33119508 |
atgtaattgattgaaaaaagcgg-agaaagaaactcgctttaataagtttgacaggagttgtaggatcactaattcttcttaccgttgtttttcatcaga |
33119606 |
T |
|
| Q |
101 |
ctgcgattacctcaccacttattagtccaacagaaactgctaacttcaattccacttgccctggttactctaaagctattgaccctgctaaatgggattg |
200 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33119607 |
ctgcgattacctcaccacttattagtccaactgaaactgctaacttcaattccacttgccctggttactctaaagctattgaccctgctaaatgggattg |
33119706 |
T |
|
| Q |
201 |
tatgacttgtcttaaagatgaatcaaattgtggcttctgtg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33119707 |
tatgacttgtcttaaagatgaatcaaattgtggcttctgtg |
33119747 |
T |
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