View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6331_low_27 (Length: 241)

Name: NF6331_low_27
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6331_low_27
NF6331_low_27
[»] chr3 (2 HSPs)
chr3 (136-222)||(28154012-28154098)
chr3 (136-222)||(28188830-28188916)
[»] chr1 (1 HSPs)
chr1 (1-138)||(30311710-30311856)


Alignment Details
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 28154012 - 28154098
Alignment:
Q  136 tttgcggtttcacaatttcactgttttgaaccgccaggaatcaatcaattggttggtaggttggattccaaattcatatgaaaagca 222  Q
    |||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28154012 tttgaggtttcacaattttactgttttgagccgccaggaatcaatcaattggttggtaggttagattccaaattcatatgaaaagca 28154098  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 136 - 222
Target Start/End: Original strand, 28188830 - 28188916
Alignment:
Q  136 tttgcggtttcacaatttcactgttttgaaccgccaggaatcaatcaattggttggtaggttggattccaaattcatatgaaaagca 222  Q
    |||| ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28188830 tttgaggtttcacaattttactgttttgagccgccaggaatcaatcaattggttggtaggttagattccaaattcatatgaaaagca 28188916  T

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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 30311710 - 30311856
Alignment:
Q  1 tttctcaattcaactttcctcgttctcatttcatgtc----------tatataagatgtctctccattcataagtcttaatttattaaatttgaatttag 90  Q
    |||||||||||||||||||| ||||||||||||||||          |||||||||||||||||||||  ||||| |||||||||| |||||||||| ||    
T  30311710 tttctcaattcaactttccttgttctcatttcatgtccatgcctttctatataagatgtctctccatttgtaagtattaatttattcaatttgaattcag 30311809  T
Q  91 agaggttataggatataatacttggtaattgagatttttcggtgattt 138  Q
    ||||||||||||| ||||| |||| ||||  ||| |||||||||||||    
T  30311810 agaggttataggacataatgcttgataatctaga-ttttcggtgattt 30311856  T

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