View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_low_29 (Length: 238)
Name: NF6331_low_29
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33119349 - 33119126
Alignment:
| Q |
1 |
cattcctgcatataaacctctccttacagctttggttttcatcatttgtactattgttatgttgtttgaaaattctgcttccttaatttccttttcagtt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33119349 |
cattcctgcatataaacctctccttatagctttggttttcatcatttgtactattgttatgttgtttgaaaattctgcttccttaatttccttttcagtt |
33119250 |
T |
|
| Q |
101 |
gattcactcaaaactttgatctcagcttcaacttcctcaggtggataaatcttcttcaaaattgctatactttcctctttccttccctattacatattgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33119249 |
gattcactcaaaactttgatctcagcttcaacttcctcaggtggataaatcttcttcaaaattgctatactttcctctttccttccctattacatattgg |
33119150 |
T |
|
| Q |
201 |
c-aaaccaatcataatgtataaat |
223 |
Q |
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| |||||||||||| ||||||||| |
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| T |
33119149 |
caaaaccaatcatattgtataaat |
33119126 |
T |
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