View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_low_34 (Length: 213)
Name: NF6331_low_34
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 549231 - 549044
Alignment:
| Q |
10 |
catcatcaatagcttcacttatttggaacatgatgcaataaaatctatacaagataccatttgtgtttaccctgtgggacccatcattcaaagagagtca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
549231 |
catcatcaatagcttcacttatttggaacatgatgcaataaaatctatacaagatatcatttgtgtttaccctgtgggacccatcattcaaagagagtca |
549132 |
T |
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| Q |
110 |
aaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgggagtggtg |
197 |
Q |
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| T |
549131 |
aaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgggagtggtg |
549044 |
T |
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Target: chr8; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 10 - 197
Target Start/End: Original strand, 23423397 - 23423584
Alignment:
| Q |
10 |
catcatcaatagcttcacttatttggaacatgatgcaataaaatctatacaagataccatttgtgtttaccctgtgggacccatcattcaaagagagtca |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423397 |
catcatcaatagcttcacttatttggaacatgatgcaataaaatctatacaagatatcatttgtgtttaccctgtgggacccatcattcaaagagagtca |
23423496 |
T |
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| Q |
110 |
aaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgggagtggtg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23423497 |
aaaagtaaagaaaataagttagagtgtattacatggttgaacaataagccttcaaaatctgttttgttcatctcttttgggagtggtg |
23423584 |
T |
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