View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6331_low_36 (Length: 206)

Name: NF6331_low_36
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6331_low_36
NF6331_low_36
[»] chr8 (6 HSPs)
chr8 (18-186)||(33553310-33553478)
chr8 (96-186)||(30191051-30191141)
chr8 (117-186)||(4560572-4560641)
chr8 (96-186)||(2487918-2488008)
chr8 (97-153)||(9700104-9700160)
chr8 (101-153)||(18331817-18331869)
[»] chr4 (7 HSPs)
chr4 (99-186)||(25717663-25717750)
chr4 (97-149)||(29126174-29126226)
chr4 (97-170)||(3639079-3639152)
chr4 (116-172)||(21157852-21157908)
chr4 (117-173)||(25487488-25487544)
chr4 (117-173)||(46860001-46860057)
chr4 (96-152)||(52169930-52169986)
[»] chr3 (3 HSPs)
chr3 (95-172)||(5407363-5407440)
chr3 (100-171)||(51929826-51929897)
chr3 (105-171)||(21872214-21872280)
[»] chr7 (3 HSPs)
chr7 (97-173)||(33894710-33894786)
chr7 (98-134)||(17988945-17988981)
chr7 (105-153)||(29363611-29363659)
[»] chr1 (6 HSPs)
chr1 (105-173)||(32515360-32515428)
chr1 (98-167)||(21002244-21002313)
chr1 (115-186)||(15581324-15581395)
chr1 (108-153)||(2832075-2832120)
chr1 (97-173)||(9507314-9507390)
chr1 (117-153)||(10199339-10199375)
[»] chr2 (11 HSPs)
chr2 (116-186)||(25609866-25609936)
chr2 (94-134)||(3312199-3312239)
chr2 (105-165)||(40944004-40944064)
chr2 (95-144)||(7928207-7928256)
chr2 (106-183)||(11063266-11063343)
chr2 (99-132)||(13325694-13325727)
chr2 (96-165)||(28810362-28810431)
chr2 (117-186)||(32821879-32821948)
chr2 (116-153)||(34054835-34054872)
chr2 (117-153)||(40759263-40759299)
chr2 (97-153)||(43259938-43259994)
[»] chr6 (5 HSPs)
chr6 (100-150)||(33284348-33284398)
chr6 (117-186)||(2455880-2455949)
chr6 (96-149)||(10476032-10476085)
chr6 (103-152)||(35070384-35070433)
chr6 (105-173)||(7901750-7901818)
[»] chr5 (3 HSPs)
chr5 (117-186)||(11457168-11457237)
chr5 (103-151)||(5377114-5377162)
chr5 (117-173)||(32849261-32849317)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 33553478 - 33553310
Alignment:
Q  18 gaacacgcggaaccactacaagaggaagaaagttacttacaagaagatctcatataagtcacacaataggaattttaactaagggcttgtttggataagc 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  33553478 gaacacgcggaaccactacaagaggaagaaagttacttacaagaagatctcatataagtcacacaataggaattttaactaagggcttgtttggattagc 33553379  T
Q  118 ttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33553378 ttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 33553310  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 30191051 - 30191141
Alignment:
Q  96 ctaagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    |||||||| |||||| ||||||||||||||| ||||||||   ||||||||||||| |  |||||||| ||||||||| ||| ||||||||    
T  30191051 ctaagggcctgtttgcataagcttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttat 30191141  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 4560641 - 4560572
Alignment:
Q  117 cttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    |||||||||||||||||||  |||||||||||||||| | ||||||||||| ||||| |||  |||||||    
T  4560641 cttatttgagcttatctattgacataagcacttgtgaggttgtttggaagaacttatggaaataacttat 4560572  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 186
Target Start/End: Original strand, 2487918 - 2488008
Alignment:
Q  96 ctaagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    |||||||| |||||||||  ||||||||||| | |||||   ||||||||||||||||  |||||||| ||| |||||  || ||||||||    
T  2487918 ctaagggcatgtttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttat 2488008  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 9700160 - 9700104
Alignment:
Q  97 taagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtga 153  Q
    ||||||| ||||||||| | ||||||||||||||||||  | ||||| |||||||||    
T  9700160 taagggcctgtttggattaacttatttgagcttatctactagcataaacacttgtga 9700104  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 153
Target Start/End: Complemental strand, 18331869 - 18331817
Alignment:
Q  101 ggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtga 153  Q
    |||||||||||||   ||||||||| ||||||||  |||||||||||||||||    
T  18331869 ggcttgtttggattgacttatttgatcttatctactaacataagcacttgtga 18331817  T

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Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 25717750 - 25717663
Alignment:
Q  99 agggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    |||||||||||||||   ||||||||||||||| || | ||||||||||||||||   ||||||||||||||||| ||| ||||||||    
T  25717750 agggcttgtttggattgtcttatttgagcttatgtaccgacataagcacttgtgaaattgtttggaagagcttatggaaacaacttat 25717663  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 149
Target Start/End: Original strand, 29126174 - 29126226
Alignment:
Q  97 taagggcttgtttggataagcttatttgagcttatctatcaacataagcactt 149  Q
    |||||||||||||||||  ||||||||||||||||||| |  |||||||||||    
T  29126174 taagggcttgtttggattggcttatttgagcttatctaccggcataagcactt 29126226  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 97 - 170
Target Start/End: Original strand, 3639079 - 3639152
Alignment:
Q  97 taagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagct 170  Q
    ||||||| | |||||||  ||||||||||||||||||| | |||||||||| |||||   | ||||||||||||    
T  3639079 taagggcatatttggatttgcttatttgagcttatctaccgacataagcacctgtgagattatttggaagagct 3639152  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 21157908 - 21157852
Alignment:
Q  116 gcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagctta 172  Q
    ||||||||||||| |||||   |||||||||||||| |  |||||||||||||||||    
T  21157908 gcttatttgagctcatctactgacataagcacttgtaagactgtttggaagagctta 21157852  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Original strand, 25487488 - 25487544
Alignment:
Q  117 cttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 173  Q
    |||||||||| |||||||| | ||||||||||||| |   |||||||||||||||||    
T  25487488 cttatttgagtttatctattagcataagcacttgtaagattgtttggaagagcttat 25487544  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 46860057 - 46860001
Alignment:
Q  117 cttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 173  Q
    ||||||||| |||||||||  ||||||||||||||||  |||||||  |||||||||    
T  46860057 cttatttgaacttatctattcacataagcacttgtgaaactgtttgagagagcttat 46860001  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 52169930 - 52169986
Alignment:
Q  96 ctaagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtg 152  Q
    |||||| |||||||||||   |||||||||| ||||||||  |||||||||||||||    
T  52169930 ctaaggacttgtttggattgacttatttgagtttatctatttacataagcacttgtg 52169986  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 172
Target Start/End: Original strand, 5407363 - 5407440
Alignment:
Q  95 actaagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagctta 172  Q
    ||||||||| |||||| || |||||||||||||||||||||  | |||| ||||||||||  ||||||| ||||||||    
T  5407363 actaagggcctgtttgcattagcttatttgagcttatctattgatataatcacttgtgatattgtttggcagagctta 5407440  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 51929897 - 51929826
Alignment:
Q  100 gggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagctt 171  Q
    |||| |||||||||   ||||||||||||||||||| | ||||| ||||||||| ||| |||||||||||||    
T  51929897 gggcctgtttggattgacttatttgagcttatctattagcataaacacttgtgaggctatttggaagagctt 51929826  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 21872214 - 21872280
Alignment:
Q  105 tgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagctt 171  Q
    ||||||||| | ||||||||| ||||||||   ||||||||||||||||  |||||||||| |||||    
T  21872214 tgtttggattaacttatttgatcttatctactgacataagcacttgtgagactgtttggaaaagctt 21872280  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 33894786 - 33894710
Alignment:
Q  97 taagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 173  Q
    ||||||| ||||||||| |||||||||||||||||| |   ||||||||||||||||  |||||||  |||||||||    
T  33894786 taagggcatgtttggattagcttatttgagcttatcaaatgacataagcacttgtgagactgtttgtgagagcttat 33894710  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 17988945 - 17988981
Alignment:
Q  98 aagggcttgtttggataagcttatttgagcttatcta 134  Q
    |||||||||||||||| | ||||||||||||||||||    
T  17988945 aagggcttgtttggattaacttatttgagcttatcta 17988981  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 29363659 - 29363611
Alignment:
Q  105 tgtttggataagcttatttgagcttatctatcaacataagcacttgtga 153  Q
    |||||||||  |||||||||| ||||||||  |||||||||||||||||    
T  29363659 tgtttggattggcttatttgaacttatctactaacataagcacttgtga 29363611  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 32515360 - 32515428
Alignment:
Q  105 tgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 173  Q
    ||||||||| ||| |||||||| |||||||  |||||||||||||||||  |||||||| |||||||||    
T  32515360 tgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttat 32515428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 21002313 - 21002244
Alignment:
Q  98 aagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaaga 167  Q
    ||||||||||||||||  |||||||||||||||||||    |||||| ||||||||  ||||||||||||    
T  21002313 aagggcttgtttggattggcttatttgagcttatctacttgcataagaacttgtgagactgtttggaaga 21002244  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 15581395 - 15581324
Alignment:
Q  115 agcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    ||||||||| ||||||||||   ||||||||||||||||   |||||||||||||| || ||| ||||||||    
T  15581395 agcttattttagcttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttat 15581324  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 153
Target Start/End: Complemental strand, 2832120 - 2832075
Alignment:
Q  108 ttggataagcttatttgagcttatctatcaacataagcacttgtga 153  Q
    |||||| ||||||||||||||||||||  | |||||||||||||||    
T  2832120 ttggattagcttatttgagcttatctactagcataagcacttgtga 2832075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 173
Target Start/End: Complemental strand, 9507390 - 9507314
Alignment:
Q  97 taagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 173  Q
    ||||||||| |||| ||  |||||||||||||||||||  | |||| ||| ||||||  |||||||| |||||||||    
T  9507390 taagggcttatttgaatttgcttatttgagcttatctactagcataggcatttgtgagactgtttgggagagcttat 9507314  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 10199339 - 10199375
Alignment:
Q  117 cttatttgagcttatctatcaacataagcacttgtga 153  Q
    ||||||||||||||||||  |||||||||||||||||    
T  10199339 cttatttgagcttatctactaacataagcacttgtga 10199375  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 25609936 - 25609866
Alignment:
Q  116 gcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    |||||||||||||||||||  |||||||| ||||||||  ||| |||||| ||||||| ||| ||||||||    
T  25609936 gcttatttgagcttatctactaacataagaacttgtgagactgcttggaatagcttatggaaacaacttat 25609866  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 134
Target Start/End: Complemental strand, 3312239 - 3312199
Alignment:
Q  94 aactaagggcttgtttggataagcttatttgagcttatcta 134  Q
    ||||||||||||||||||||  |||||||||||||||||||    
T  3312239 aactaagggcttgtttggattggcttatttgagcttatcta 3312199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 40944064 - 40944004
Alignment:
Q  105 tgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaa 165  Q
    ||||||||| |||||||||||| |||||||   ||||||||||||||||  ||||||||||    
T  40944064 tgtttggattagcttatttgagtttatctaatgacataagcacttgtgaaactgtttggaa 40944004  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 7928207 - 7928256
Alignment:
Q  95 actaagggcttgtttggataagcttatttgagcttatctatcaacataag 144  Q
    ||||||||| |||||||||  ||||||||||||||||||||  |||||||    
T  7928207 actaagggcctgtttggattggcttatttgagcttatctattgacataag 7928256  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 183
Target Start/End: Complemental strand, 11063343 - 11063266
Alignment:
Q  106 gtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaact 183  Q
    |||||||| ||||||||||| ||||||||  |||| ||||| ||| ||  || ||| ||||||||||| |||||||||    
T  11063343 gtttggattagcttatttgaacttatctactaacacaagcatttgcgagactattttgaagagcttatggaagcaact 11063266  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 132
Target Start/End: Complemental strand, 13325727 - 13325694
Alignment:
Q  99 agggcttgtttggataagcttatttgagcttatc 132  Q
    ||||||||||||||| ||||||||||||||||||    
T  13325727 agggcttgtttggatcagcttatttgagcttatc 13325694  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 28810362 - 28810431
Alignment:
Q  96 ctaagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaa 165  Q
    |||||||| |||||||||   ||||||||||||| |||||   ||||| ||||||||| |||||||||||    
T  28810362 ctaagggcctgtttggattgacttatttgagcttctctattggcataaacacttgtgaggctgtttggaa 28810431  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 32821948 - 32821879
Alignment:
Q  117 cttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    |||||||||||||||||| |||| |||||| |||  |  ||||||||||||| |||| ||| ||||||||    
T  32821948 cttatttgagcttatctaccaacgtaagcatttgcaagactgtttggaagagtttatagaaacaacttat 32821879  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 153
Target Start/End: Original strand, 34054835 - 34054872
Alignment:
Q  116 gcttatttgagcttatctatcaacataagcacttgtga 153  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  34054835 gcttatatgagcttatctaccaacataagcacttgtga 34054872  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 40759299 - 40759263
Alignment:
Q  117 cttatttgagcttatctatcaacataagcacttgtga 153  Q
    |||||||||||||||||||  ||||||||||||||||    
T  40759299 cttatttgagcttatctattgacataagcacttgtga 40759263  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 153
Target Start/End: Complemental strand, 43259994 - 43259938
Alignment:
Q  97 taagggcttgtttggataagcttatttgagcttatctatcaacataagcacttgtga 153  Q
    |||||| ||||||||||  |||||||||| ||||||||  | |||||||||||||||    
T  43259994 taagggattgtttggattggcttatttgaacttatctactagcataagcacttgtga 43259938  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 33284398 - 33284348
Alignment:
Q  100 gggcttgtttggataagcttatttgagcttatctatcaacataagcacttg 150  Q
    ||||||||||||||  ||||||||||||||| ||| ||||||||| |||||    
T  33284398 gggcttgtttggattggcttatttgagcttacctaacaacataagaacttg 33284348  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 2455949 - 2455880
Alignment:
Q  117 cttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    |||||||||||||||||| |  |||||||||||| ||   ||||| ||||||||||| ||| ||||||||    
T  2455949 cttatttgagcttatctaccggcataagcacttgcgagattgtttagaagagcttatggaaacaacttat 2455880  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 10476032 - 10476085
Alignment:
Q  96 ctaagggcttgtttggataagcttatttgagcttatctatcaacataagcactt 149  Q
    |||||||||||||||||| || ||||||||  || |||| ||||||||||||||    
T  10476032 ctaagggcttgtttggattagattatttgattttttctaccaacataagcactt 10476085  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 35070384 - 35070433
Alignment:
Q  103 cttgtttggataagcttatttgagcttatctatcaacataagcacttgtg 152  Q
    |||||||||||   ||||||||||||||||||  ||||||||||||||||    
T  35070384 cttgtttggattttcttatttgagcttatctactaacataagcacttgtg 35070433  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 7901750 - 7901818
Alignment:
Q  105 tgtttggataagcttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 173  Q
    ||||||||| | |||||||||| |||| ||  | ||||||| |||||||  ||||||||||||||||||    
T  7901750 tgtttggattaacttatttgagtttatatagtatcataagcccttgtgagactgtttggaagagcttat 7901818  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 11457237 - 11457168
Alignment:
Q  117 cttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttattgaagcaacttat 186  Q
    |||||||||||||||||||   || || |||||||||  |||||| ||||||||||| ||| ||||||||    
T  11457237 cttatttgagcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttat 11457168  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 5377114 - 5377162
Alignment:
Q  103 cttgtttggataagcttatttgagcttatctatcaacataagcacttgt 151  Q
    |||||| ||||  ||||||||||||||||||||  ||||||||||||||    
T  5377114 cttgttcggattggcttatttgagcttatctattgacataagcacttgt 5377162  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 173
Target Start/End: Complemental strand, 32849317 - 32849261
Alignment:
Q  117 cttatttgagcttatctatcaacataagcacttgtgatgctgtttggaagagcttat 173  Q
    ||||||| ||||||||||  | ||||||||||||||| ||||||||| ||| |||||    
T  32849317 cttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttat 32849261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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