View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6331_low_37 (Length: 205)

Name: NF6331_low_37
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6331_low_37
NF6331_low_37
[»] chr6 (1 HSPs)
chr6 (56-189)||(3017845-3017979)
[»] chr4 (2 HSPs)
chr4 (1-189)||(34344129-34344317)
chr4 (110-179)||(18913128-18913197)
[»] chr5 (2 HSPs)
chr5 (109-189)||(37278612-37278692)
chr5 (6-40)||(37278517-37278551)
[»] chr7 (2 HSPs)
chr7 (134-189)||(46420229-46420284)
chr7 (1-41)||(46420156-46420196)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 3e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 3017979 - 3017845
Alignment:
Q  56 attgaaacaaatacccaccacacacgttatctttccttcannnnnnnng-gattcattgatttggtcgaccatacaaatacacacattacaacattttat 154  Q
    ||||||||||||||||||||||||| ||||||||||||||          |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3017979 attgaaacaaatacccaccacacacattatctttccttcattttttttttgattcattgatttggtggaccatacaaatacacacattacaacattttat 3017880  T
Q  155 tttatcacttgttatctctccaaagtccaaagaac 189  Q
    |||||||||||||||||||||||||||||||||||    
T  3017879 tttatcacttgttatctctccaaagtccaaagaac 3017845  T

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Target: chr4 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 34344317 - 34344129
Alignment:
Q  1 tacagaccatttgtttactttttcactcctttattgcttaannnnnnnnnnnnnnattgaaacaaatacccaccacacacgttatctttccttca-nnnn 99  Q
    |||||||||||||||||||||||||||  ||||||||||||              ||||||||||||| |||| |||||||||||||||||||||         
T  34344317 tacagaccatttgtttactttttcactattttattgcttaa-tttttatttttttattgaaacaaatatccacaacacacgttatctttccttcattttt 34344219  T
Q  100 nnnnggattcattgatttggtcgaccatacaaatacacacattacaacattttattttatcacttgttatctctccaaagtccaaagaac 189  Q
        ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  34344218 ttttggattcattgatttggtggaccatacaaatacacacattagaacattttattttatcacttgttatctctccaaagtccaaagaac 34344129  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 18913128 - 18913197
Alignment:
Q  110 attgatttggtcgaccatacaaatacacacattacaacattttattttatcacttgttatctctccaaag 179  Q
    ||||| ||||| |||| |||||||||||| || ||||| || | ||||| ||||||||||||||||||||    
T  18913128 attgagttggtggaccttacaaatacacatatcacaaccttatcttttaccacttgttatctctccaaag 18913197  T

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Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 109 - 189
Target Start/End: Original strand, 37278612 - 37278692
Alignment:
Q  109 cattgatttggtcgaccatacaaatacacacattacaacattttattttatcacttgttatctctccaaagtccaaagaac 189  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  37278612 cattgatttggtggatcatacaaatacacacattacaacattttcttttatcacttgttatctctccaaagtccaaagaac 37278692  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 40
Target Start/End: Original strand, 37278517 - 37278551
Alignment:
Q  6 accatttgtttactttttcactcctttattgctta 40  Q
    ||||||||||||||||||||||| |||||||||||    
T  37278517 accatttgtttactttttcactcttttattgctta 37278551  T

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Target: chr7 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 189
Target Start/End: Original strand, 46420229 - 46420284
Alignment:
Q  134 acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaac 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46420229 acacacattacaacattttattttatcacttgttatctctccaaagtccaaagaac 46420284  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 46420156 - 46420196
Alignment:
Q  1 tacagaccatttgtttactttttcactcctttattgcttaa 41  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  46420156 tacataccatttgtttactttttcactcctttattgcttaa 46420196  T

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