View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_low_5 (Length: 470)
Name: NF6331_low_5
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Original strand, 2470269 - 2470720
Alignment:
| Q |
1 |
aaatactattaaacttcaccttggtaacttcaaattaaccgctaaaagaaatggtagctaatctgatattttcttgtagtgaaggttgatattgaaacta |
100 |
Q |
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||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2470269 |
aaatactattaaacttcactttggtaacttcaa-----ccgctaaaacaaatggtagctaatctgatattttcttgtagtgaaggttgatattgaaacta |
2470363 |
T |
|
| Q |
101 |
ggtaaagataaaacatccttaaggtttagaccatctgaaatattaacatttcctactacttctgccatccttgtattaccgtttggtaagctaacaagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2470364 |
ggtaaagataaaacatccttaaggtttagaccatctgaaatattaacatttcctactacttctgccatccttgtattaccgtttggtaagctaacaagaa |
2470463 |
T |
|
| Q |
201 |
taggtagtaagtatcttattcttatgataagaatcaaatcaattcaatgaattttaaatatgatcggtcacaaaaataatctattatctatgtttgagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2470464 |
taggtagtaagtatcttattcttatgataagaatcaaatcaattcaatgaattttaaatatgatcggtcacaaaaataatctattatctatgtttgagtt |
2470563 |
T |
|
| Q |
301 |
aatagactacactgaattcaatagactacagtgcagaagcagcacacagaattttctgtcagcagcggctgtacaaggtaaaagaagacgagtccaaaga |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
2470564 |
aatagactacactgaattcaatagactacagtgcagaagcagcacacagaattttctgtcagcagcggctgtacaaggtaaaagaagacaagtccaaaga |
2470663 |
T |
|
| Q |
401 |
aaataagtgatgatataaatcaaaggactcatccaaatacactgacagaaatttttg |
457 |
Q |
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| T |
2470664 |
aaataagtgatgatataaatcaaaggactcatccaaatacactgacagaaatttttg |
2470720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 82 - 265
Target Start/End: Original strand, 2458642 - 2458817
Alignment:
| Q |
82 |
aaggttgatattgaaactaggtaaagataaaacatccttaaggtttagaccatctgaaatattaacatttcctactacttctgccatccttgtattaccg |
181 |
Q |
| |
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|||||||||||||||| |||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
2458642 |
aaggttgatattgaaattaggtaaagatagaacatccttaacgtttaggccatctgaaatattaacatttcctacaa--------atccttgtattaccg |
2458733 |
T |
|
| Q |
182 |
tttggtaagctaacaagaataggtagtaagtatcttattcttatgataagaatcaaatcaattcaatgaattttaaatatgatc |
265 |
Q |
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| T |
2458734 |
tttggtaagctaataggaataggtagtaagtatcttatttttatgataagaatcaaatcaattcaatgaatttaaaatatgatc |
2458817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 2498547 - 2498597
Alignment:
| Q |
198 |
gaataggtagtaagtatcttattcttatgataagaatcaaatcaattcaat |
248 |
Q |
| |
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|
| T |
2498547 |
gaataggtagtaagtatcttattcttatgttaagaatcaaatcaattcaat |
2498597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 82 - 155
Target Start/End: Original strand, 2498470 - 2498543
Alignment:
| Q |
82 |
aaggttgatattgaaactaggtaaagataaaacatccttaaggtttagaccatctgaaatattaacatttccta |
155 |
Q |
| |
|
|||||||||||| ||| |||||| ||| ||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2498470 |
aaggttgatattaaaatcaggtaagaatagaacatccttaaggtttagaccgtctgaaatattaacatttccta |
2498543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 438
Target Start/End: Complemental strand, 43282130 - 43282068
Alignment:
| Q |
375 |
aaggtaaaagaagacgagtccaaagaaaataagtgatgatataaatcaaaggactcatccaaat |
438 |
Q |
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|||||||||||||||| ||||||||||||||| || || |||||| ||||| |||| ||||||| |
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| T |
43282130 |
aaggtaaaagaagacgggtccaaagaaaataaatgttg-tataaagcaaagaactcgtccaaat |
43282068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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