View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6331_low_6 (Length: 457)
Name: NF6331_low_6
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6331_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 29 - 433
Target Start/End: Complemental strand, 887467 - 887069
Alignment:
| Q |
29 |
ttcgattagcaagcatatatttcctttactctgaaaattaaggatatatagctagcatgttagaatataattacttaattagaggatcataaaatcaaag |
128 |
Q |
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| T |
887467 |
ttcgaatagcaagcatatatttccttttctctgaaaattaaggatatatagctagcatgttagtatataattacttaattagaggatcataaaatcaaag |
887368 |
T |
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| Q |
129 |
gtagcttaataaaaaggtgctcaccgacagttttatataatgtttaactagtaattcaaacttcacattgtttttgttgtttgtgatgctcaatattata |
228 |
Q |
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| T |
887367 |
gtagcttcacaaaaaggtgctcaccgagagggttatataatgttcaacttgtaattcaaacttcacattgtt------gtttgtgatgctcaatattata |
887274 |
T |
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| Q |
229 |
ggcttcaaataatctttgctcacttggtctatagactgaaatatcttacccgtccaacaaattagatcgtcttcctcagcttgtttaaacgttcctttat |
328 |
Q |
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| T |
887273 |
ggcttcaaataatctttgctcacttggtctatagactgaaatatcttacccgtccaacaaattagatcgtcttcctcagcttttttaaacgttcctttat |
887174 |
T |
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| Q |
329 |
tattcaattctgtgtttatctaaaatatcaattaatatttgatcaacaaccactatgaactgaaaacgttatagttatttaatttctatgatttttgctc |
428 |
Q |
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| T |
887173 |
tattcaattctgtgtttatctaaaatatcaattaatatttgatcaacaaccactatgaactgaaaacgttatagttatttaatttctatgatttttgctc |
887074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 341 - 403
Target Start/End: Original strand, 31875184 - 31875246
Alignment:
| Q |
341 |
tgtttatctaaaatatcaattaatatttgatcaacaaccactatgaactgaaaacgttatagt |
403 |
Q |
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| T |
31875184 |
tgtttatctaaaatattaattaatatttgatcaacaaccactatgaactgaaaatgttatagt |
31875246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 31880610 - 31880668
Alignment:
| Q |
93 |
atataattacttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
151 |
Q |
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| T |
31880610 |
atataattatttaattagaggatcataaaatcaaaggtagcttaataaaaaggtgctca |
31880668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 219 - 384
Target Start/End: Original strand, 31881544 - 31881715
Alignment:
| Q |
219 |
caatattataggcttcaaataatctttgctcacttggtctatagactgaaatatctt---acccgtccaacaaattagatcgtcttcctcagcttgttta |
315 |
Q |
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| T |
31881544 |
caatatcataggcttcaaataccctttgctcacttcgtctatagacttaaatggtttgtcacccttccaacaatttagaccgtcttccttaataggtgta |
31881643 |
T |
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| Q |
316 |
aacgttc---ctttattattcaattctgtgtttatctaaaatatcaattaatatttgatcaacaaccactat |
384 |
Q |
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| T |
31881644 |
aactttcttcctttaaaattcaattcaatgtgtatctgaaatattaattaatatttgatcaacaaccactat |
31881715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 31875053 - 31875100
Alignment:
| Q |
217 |
ctcaatattataggcttcaaataatctttgctcacttggtctatagac |
264 |
Q |
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| T |
31875053 |
ctcattattataggcttcaaatagtctttgctcacttcgtctatagac |
31875100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 31900142 - 31900074
Alignment:
| Q |
29 |
ttcgattagcaagcatatatttcctttactctgaaaattaaggatatatagctagcatgttagaatataat |
99 |
Q |
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| T |
31900142 |
ttcgattagcaaacatat--ttcctttactctgaaaattaaggatatatagctagcatgttagtatataat |
31900074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 297 - 365
Target Start/End: Original strand, 29146628 - 29146696
Alignment:
| Q |
297 |
gtcttcctcagcttgtttaaacgttcctttattattcaattctgtgtttatctaaaatatcaattaata |
365 |
Q |
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| T |
29146628 |
gtcttccttagcttgtgtaaacgtttctttcgaattcaattctttgtttatctgaaatatcaattaata |
29146696 |
T |
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