View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6331_low_7 (Length: 430)

Name: NF6331_low_7
Description: NF6331
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6331_low_7
NF6331_low_7
[»] chr8 (8 HSPs)
chr8 (20-338)||(20900530-20900865)
chr8 (246-338)||(23033395-23033487)
chr8 (248-338)||(34784518-34784608)
chr8 (249-338)||(1548139-1548228)
chr8 (251-338)||(3117707-3117794)
chr8 (245-332)||(3277516-3277603)
chr8 (266-322)||(29168561-29168617)
chr8 (247-283)||(15657347-15657383)
[»] chr5 (5 HSPs)
chr5 (247-338)||(7992407-7992498)
chr5 (242-338)||(32325810-32325906)
chr5 (247-338)||(12904979-12905070)
chr5 (247-298)||(34641930-34641981)
chr5 (247-283)||(28827503-28827539)
[»] chr2 (7 HSPs)
chr2 (247-338)||(25438287-25438378)
chr2 (249-338)||(44673172-44673261)
chr2 (245-298)||(21006375-21006428)
chr2 (251-320)||(37154903-37154972)
chr2 (245-298)||(24132209-24132262)
chr2 (247-298)||(6536545-6536596)
chr2 (247-283)||(39574644-39574680)
[»] chr7 (4 HSPs)
chr7 (247-337)||(36167731-36167821)
chr7 (247-336)||(19886572-19886661)
chr7 (246-338)||(12859244-12859336)
chr7 (247-336)||(32775171-32775260)
[»] chr6 (1 HSPs)
chr6 (246-338)||(13425675-13425767)
[»] chr3 (5 HSPs)
chr3 (251-338)||(32130160-32130247)
chr3 (247-338)||(53208684-53208775)
chr3 (247-338)||(7322855-7322946)
chr3 (247-319)||(9454604-9454676)
chr3 (247-283)||(1915484-1915520)
[»] chr4 (6 HSPs)
chr4 (249-338)||(2588490-2588579)
chr4 (249-337)||(5650759-5650847)
chr4 (247-338)||(16497909-16498000)
chr4 (247-322)||(52249500-52249575)
chr4 (264-322)||(39599164-39599222)
chr4 (247-298)||(11156549-11156600)
[»] chr1 (1 HSPs)
chr1 (247-298)||(23963006-23963057)
[»] scaffold0003 (1 HSPs)
scaffold0003 (247-280)||(247194-247227)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 20 - 338
Target Start/End: Original strand, 20900530 - 20900865
Alignment:
Q  20 tgataacctttcatgtctcgtaatgaaggttgtgatgtagatttacattcaaatagtcagaaatattcaattatg---------aagtaggtaggtgtgt 110  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  20900530 tgataacctttcatatctcgtaatgaaggttgtgatgtagatttacattcaaatagtcagaaatattcaattatgtaaattgtgaagtaggtaggtgtgt 20900629  T
Q  111 ggattatcccggatacgggccagtcatgtctttttgaagagaaatgatatttatacaaccttttaaataatattttctctcatgtgctgcaccaacatgg 210  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20900630 ggattatcccggatacgg-ccagtcatgtctttttgaagagaaatgatatttatacaaccttttaaataatattttatctcatgtgctgcaccaacatgg 20900728  T
Q  211 aactgttctatgaagtacataaccttgaaccaacat---------caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccac 301  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  20900729 aactgttctatgaagtacataaccttgaaccaacatgtgctgcaccaaggtagtcaggaacaagtcccagcacgtaggatcgcacgatcttacgtgccac 20900828  T
Q  302 aacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    | ||||||||||||||||||||||||||||| |||||    
T  20900829 agcacctcgactgtgcttcgatcctacttacaaaccg 20900865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 23033395 - 23033487
Alignment:
Q  246 tcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  23033395 tcaaggtactcaggaacgagtcccagcatgtaggatcgcatgatcttacgtgccacaacacctcgaccgtgcttcgatcctacttacgaaccg 23033487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 248 - 338
Target Start/End: Complemental strand, 34784608 - 34784518
Alignment:
Q  248 aaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||| |||||    
T  34784608 aaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacaaaccg 34784518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 1548139 - 1548228
Alignment:
Q  249 aggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||||||||| |||||||||| ||||||||||| |||||||||||||||| ||||||||  |||||||||||||||||||||||||    
T  1548139 aggtagtcaggaacgagtcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaacgtgcttcgatcctacttacgaaccg 1548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 3117707 - 3117794
Alignment:
Q  251 gtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||||||  |||||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||||||||||    
T  3117707 gtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagtacctcgaccgtgcttcgatcctacttacgaaccg 3117794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 245 - 332
Target Start/End: Original strand, 3277516 - 3277603
Alignment:
Q  245 atcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttac 332  Q
    |||||||||||||||||| | |||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||    
T  3277516 atcaaggtagtcaggaacgaatcccagcatgtaggatcgcacgatcttacgtgccacaacacctcgaccgtgcttcaatcctacttac 3277603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 266 - 322
Target Start/End: Complemental strand, 29168617 - 29168561
Alignment:
Q  266 tcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcga 322  Q
    ||||||| ||||||||| || |||||||||||||||| ||||||||| |||||||||    
T  29168617 tcccagctcgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcga 29168561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 15657347 - 15657383
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcg 283  Q
    |||||||||||||||| ||||||||||||||||||||    
T  15657347 caaggtagtcaggaacgagtcccagcacgtaggatcg 15657383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 7992498 - 7992407
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  7992498 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 7992407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 242 - 338
Target Start/End: Complemental strand, 32325906 - 32325810
Alignment:
Q  242 aacatcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||| |||||||||||||||| |||||||||||||||||||||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  32325906 aacaccaaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcgtacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 32325810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 12905070 - 12904979
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||  ||||||||||||||||||||||||    
T  12905070 caaggtagtcaggaacgagttccagcacgtaggatcgcacgatcttacgtgccacaacacatcgaccatgcttcgatcctacttacgaaccg 12904979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 34641981 - 34641930
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 298  Q
    |||||||| ||||| | |||||||||| ||||||||||| ||||||||||||    
T  34641981 caaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 34641930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 28827503 - 28827539
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcg 283  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  28827503 caaggtagacaggaacgagtcccagcacgtaggatcg 28827539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 5e-35; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 25438287 - 25438378
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||    
T  25438287 caaggtagtcaggaacgagtcccagcacgtaggatcgcatgatcttacgtgccacagcacctcgaccgtgctttgatcctacttacgaaccg 25438378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 44673172 - 44673261
Alignment:
Q  249 aggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  44673172 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 44673261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 245 - 298
Target Start/End: Complemental strand, 21006428 - 21006375
Alignment:
Q  245 atcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 298  Q
    |||||||||| ||||| | |||||||||||||||||||||| ||||||||||||    
T  21006428 atcaaggtagccaggatcgagtcccagcacgtaggatcgcacgatcttacgtgc 21006375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 251 - 320
Target Start/End: Complemental strand, 37154972 - 37154903
Alignment:
Q  251 gtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttc 320  Q
    ||||||| |||| |||||| || |||||||||||| ||||||||||||||| ||| |||||| |||||||    
T  37154972 gtagtcaagaacgagtcccggctcgtaggatcgcacgatcttacgtgccacgacatctcgaccgtgcttc 37154903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 245 - 298
Target Start/End: Original strand, 24132209 - 24132262
Alignment:
Q  245 atcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 298  Q
    |||||||||| ||||| | | |||||||||||||||||||| ||||||||||||    
T  24132209 atcaaggtagccaggatcgaatcccagcacgtaggatcgcacgatcttacgtgc 24132262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 6536545 - 6536596
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 298  Q
    |||||||| ||||| | |||||||||| ||||||||||| ||||||||||||    
T  6536545 caaggtagccaggatcgagtcccagcatgtaggatcgcacgatcttacgtgc 6536596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 283
Target Start/End: Complemental strand, 39574680 - 39574644
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcg 283  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  39574680 caaggtagacaggaacgagtcccagcacgtaggatcg 39574644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 247 - 337
Target Start/End: Complemental strand, 36167821 - 36167731
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaacc 337  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  36167821 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 36167731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 19886572 - 19886661
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaac 336  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  19886572 caaggtagtcaggaacgagtcccagcacgtaggatcacacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 19886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 12859336 - 12859244
Alignment:
Q  246 tcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||| ||||||||||||||||    
T  12859336 tcaaggtagtcaggaatgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccg 12859244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 247 - 336
Target Start/End: Original strand, 32775171 - 32775260
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaac 336  Q
    |||||||||||||||| |||||||||| |||||||| || || ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  32775171 caaggtagtcaggaacgagtcccagcatgtaggatcacacgaccttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaac 32775260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 246 - 338
Target Start/End: Complemental strand, 13425767 - 13425675
Alignment:
Q  246 tcaaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    ||||||||||||||||| |||| ||||||||||||||||| ||||||| |||||||| ||||||||| |||||||||||||||||||||||||    
T  13425767 tcaaggtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttatgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 13425675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 251 - 338
Target Start/End: Original strand, 32130160 - 32130247
Alignment:
Q  251 gtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||||||| |||| ||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  32130160 gtagtcaggaacgagtcgcagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcgatcctacttacgaaccg 32130247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 53208775 - 53208684
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| ||| ||||||||||||||| |||||    
T  53208775 caaggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgtttcgatcctacttacaaaccg 53208684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 338
Target Start/End: Original strand, 7322855 - 7322946
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||| ||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||  | ||||||||||||||    
T  7322855 caaggtagccaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgcttcagttctacttacgaaccg 7322946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 319
Target Start/End: Original strand, 9454604 - 9454676
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgctt 319  Q
    ||||||||||| |||| | |||||||| ||||||||||| |||||||||||||||| ||||||||| ||||||    
T  9454604 caaggtagtcaagaacgattcccagcatgtaggatcgcacgatcttacgtgccacagcacctcgaccgtgctt 9454676  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 283
Target Start/End: Original strand, 1915484 - 1915520
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcg 283  Q
    |||||||| ||||||| ||||||||||||||||||||    
T  1915484 caaggtagacaggaacgagtcccagcacgtaggatcg 1915520  T

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Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 249 - 338
Target Start/End: Complemental strand, 2588579 - 2588490
Alignment:
Q  249 aggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||| || ||||| ||||||||||||||||    
T  2588579 aggtagtcaggaacgagtcccagcacgtaggatcgcacgatcttacgtgccacagcacctcgaccgtacttcggtcctacttacgaaccg 2588490  T

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Target: chr4; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 5650847 - 5650759
Alignment:
Q  249 aggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaacc 337  Q
    |||||||||||||| ||||| ||||||||||||||||  |||| |||||||||| ||||||||| ||||||||||||||||||||||||    
T  5650847 aggtagtcaggaacgagtccaagcacgtaggatcgcacaatctcacgtgccacagcacctcgaccgtgcttcgatcctacttacgaacc 5650759  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 247 - 338
Target Start/End: Complemental strand, 16498000 - 16497909
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcgatcctacttacgaaccg 338  Q
    ||||||||||| |||| |||||||||||||||||||||| |||| || |||||||| ||||||||| |||||||| ||||||||||||||||    
T  16498000 caaggtagtcaagaacgagtcccagcacgtaggatcgcacgatcgtatgtgccacagcacctcgaccgtgcttcggtcctacttacgaaccg 16497909  T

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Target: chr4; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 322
Target Start/End: Complemental strand, 52249575 - 52249500
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcga 322  Q
    |||||||||||||||  |||||||| ||||||||||||| |||||||||||||||| |||||| || |||||||||    
T  52249575 caaggtagtcaggaatgagtcccagtacgtaggatcgcacgatcttacgtgccacagcacctctaccgtgcttcga 52249500  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 322
Target Start/End: Complemental strand, 39599222 - 39599164
Alignment:
Q  264 agtcccagcacgtaggatcgcatgatcttacgtgccacaacacctcgactgtgcttcga 322  Q
    ||||||||| ||||||||| || |||||||||| |||||||||||| | ||||||||||    
T  39599222 agtcccagctcgtaggatcacacgatcttacgttccacaacacctcaattgtgcttcga 39599164  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 298
Target Start/End: Original strand, 11156549 - 11156600
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 298  Q
    |||||||| ||||| | ||| |||||||||||||||||||||||||| ||||    
T  11156549 caaggtagccaggatcgagttccagcacgtaggatcgcatgatcttatgtgc 11156600  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 298
Target Start/End: Complemental strand, 23963057 - 23963006
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtaggatcgcatgatcttacgtgc 298  Q
    |||||||| ||||| |  ||||||||||||||||||||||||||||||||||    
T  23963057 caaggtagccaggatcgggtcccagcacgtaggatcgcatgatcttacgtgc 23963006  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 247227 - 247194
Alignment:
Q  247 caaggtagtcaggaacaagtcccagcacgtagga 280  Q
    |||||||||||||||| |||||||||||||||||    
T  247227 caaggtagtcaggaaccagtcccagcacgtagga 247194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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