View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6332_high_1 (Length: 507)
Name: NF6332_high_1
Description: NF6332
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6332_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 18 - 497
Target Start/End: Original strand, 301324 - 301803
Alignment:
| Q |
18 |
ataattgatggaaccagtttggtctataccttggagaaagaactggagtcagaggcaatattatccttctttatatgaaatttttgtttgaaatattttt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
301324 |
ataattgatggaaccagtttggtctataccttggagaaagaactggagtcagaggcaatattatccttctttatatgaaatttttgtttgaaatattttt |
301423 |
T |
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| Q |
118 |
atattttggaaaactaatgcttgggttaatttggtgcatattcaactgttttagattgaatactaactagtttaccatctcctttcaacagatttttgac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
301424 |
atattttggaaaactaatgcttgggttaatttggtgcatattcaactgttttagattgaatactaactagtttaccatctcctttcaacagattttttac |
301523 |
T |
|
| Q |
218 |
cttgcaacttcttgtatggttgtgttatgctgttatgtttcaccattacaaaaagcagtaattcttgatctgataaagagtcgtacaatataaaattagc |
317 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
301524 |
cttgcaacttcttgtatggttgtgttatgctgttgtgtttcaccattacaaaaagcagtaattgttgatctgataaagagtcgtacaatataaaattagc |
301623 |
T |
|
| Q |
318 |
tataggggatggtgagtttttcataatcatatctgaaatagtctgcagtttatatgtgtactttgtttgggggactgagcagtgattgataaggatttgt |
417 |
Q |
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| T |
301624 |
tataggggatggtgagtttttcataatcatatctgaaatagtctgcagtttatatgtgtactttgtttgggggactgagcagtgattgataaggatttgt |
301723 |
T |
|
| Q |
418 |
caataagttaggcttctttttcacttaatgtgtcacaggaacttttaatttttaaatatgttttcaaaatgagacctatg |
497 |
Q |
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| T |
301724 |
caataagttaggcttctttttcacttaatgtgtcacaggaacttttaatttttaaatatgttttcaaaattagacctatg |
301803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 208
Target Start/End: Original strand, 299161 - 299350
Alignment:
| Q |
18 |
ataattgatggaaccagtttggtctataccttggagaaagaactggagtcagaggcaatattatccttctttatatgaaatttttgtttgaaatattttt |
117 |
Q |
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|||||||||| |||||||||||| | || ||||||||| || ||||||||||||| || ||||| | || | ||||| || ||||||||| ||||||||| |
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| T |
299161 |
ataattgatgaaaccagtttggtttgtatcttggagaaggagctggagtcagaggtaagattatgcctcctcatatg-aagttttgtttggaatattttt |
299259 |
T |
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| Q |
118 |
atattttggaaaactaatgcttgggttaattt-ggtgcatattcaactgttttagattgaatactaactagtttaccatctcctttcaacag |
208 |
Q |
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| T |
299260 |
atctgct-gaagactaatgcctgggttaatttaggtacatgtacaaatgttttagatggattactaactggtttcccctttcctttcaacag |
299350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 201 - 297
Target Start/End: Complemental strand, 27464956 - 27464860
Alignment:
| Q |
201 |
ttcaacagatttttgaccttgcaacttcttgtatggttgtgttatgctgttatgtttcaccattacaaaaagcagtaattcttgatctgataaagag |
297 |
Q |
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|||||||| ||||||||||||||| ||| |||| ||||||| | || ||| |||| |||| || || || || | |||| |||||||||||||||| |
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| T |
27464956 |
ttcaacagctttttgaccttgcaatttcctgtaaggttgtgctgtgttgtcgtgttgcacccttgcagaaggctggaattgttgatctgataaagag |
27464860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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